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(-) Description

Title :  THE FIRST SH3 DOMAIN FROM CAP/PONSIN IN COMPLEX WITH PROLINE RICH PEPTIDE FROM VINCULIN
 
Authors :  D. Zhao, F. Li, J. Wu, Y. Shi, Z. Zhang, Q. Gong
Date :  11 Jul 13  (Deposition) - 28 May 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sh3 Domain, Cell Migration, Proline Rich Peptide, Focal Adhesion, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Zhao, X. Wang, J. Peng, C. Wang, F. Li, Q. Sun, Y. Zhang, J. Zhang, G. Cai, X. Zuo, J. Wu, Y. Shi, Z. Zhang, Q. Gong
Structural Investigation Of The Interaction Between The Tandem Sh3 Domains Of C-Cbl-Associated Protein And Vinculin
J. Struct. Biol. V. 187 194 2014
PubMed-ID: 24878663  |  Reference-DOI: 10.1016/J.JSB.2014.05.009

(-) Compounds

Molecule 1 - SORBIN AND SH3 DOMAIN-CONTAINING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PROTEIN-PROTEIN BINDING DOMAIN, UNP RESIDUES 794-854
    Gene: KIAA0894, KIAA1296, SH3D5, SORBS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PONSIN, SH3 DOMAIN PROTEIN 5, SH3P12, C-CBL-ASSOCIATED PROTEIN, CAP
 
Molecule 2 - VINCULIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PROLINE RICH PEPTIDE, UNP RESIDUES 870-879
    Gene: VCL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: METAVINCULIN, MV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LNP)

(-) Sites  (0, 0)

(no "Site" information available for 4LNP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LNP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LNP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LNP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LNP)

(-) Exons   (0, 0)

(no "Exon" information available for 4LNP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..................eeeeeee....eeeeee..eeeeee...eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4lnp A 794 EMRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAE 854
                                   803       813       823       833       843       853 


Chain B from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4lnp B 870 VPPPRPPPPE 879
                                   879
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LNP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LNP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LNP)

(-) Gene Ontology  (70, 85)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRBS1_HUMAN | Q9BX66: 2dl3 2ecz 2lj0 2lj1 2mox 2o2w 2o31 2o9s 2o9v 4ln2
        VINC_HUMAN | P18206: 1rkc 1rke 1syq 1tr2 1ydi 2gww 2hsq 2ibf 3h2u 3h2v 3jbk 3myi 3rf3 3s90 3tj5 3tj6 3vf0 4dj9 4ehp 4ln2 4pr9 5l0c 5l0d 5l0f 5l0g 5l0h 5l0i 5l0j

(-) Related Entries Specified in the PDB File

2mox 4ln2