3VF0 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   RAVER1 IN COMPLEX WITH METAVINCULIN L954 DELETION MUTANT

Authors :   J. H. Lee, C. Vonrhein, G. Bricogne, T. Izard

Date :   09 Jan 12 (Deposition) - 25 Jul 12 (Release) - 19 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.54

Chains :   Asym. Unit : A,B
Biol. Unit 1: A (1x),B (1x)

Keywords :   Cytoskeletal F-Actin Binding Protein, Ribonucleoprotein, Cell Adhesion-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. H. Lee, E. S. Rangarajan, C. Vonrhein, G. Bricogne, T. Izard
The Metavinculin Tail Domain Directs Constitutive Interactions With Raver1 And Vinculin Rna.
J. Mol. Biol. V. 422 697 2012
PubMed-ID: 22709580 | Reference-DOI: 10.1016/J.JMB.2012.06.015

Molecule 1 - VINCULIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	511693
	Gene	:	VCL
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	METAVINCULIN

Molecule 2 - RIBONUCLEOPROTEIN PTB-BINDING 1
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	511693
	Gene	:	KIAA1978, RAVER1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PROTEIN RAVER-1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A (1x)	B (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 14)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	GOL	13	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 11)

No.	Name	Count	Type	Full Name
1	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	GOL	11	Ligand/Ion	GLYCEROL

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:1130 , TYR A:1132 , GLN A:1133 , LYS B:262 , LEU B:318	BINDING SITE FOR RESIDUE EPE A 2001
02	AC2	SOFTWARE	SER A:980 , SER A:981 , LYS A:991 , LYS A:1128 , HOH A:2189	BINDING SITE FOR RESIDUE GOL A 2002
03	AC3	SOFTWARE	ASP A:1026 , THR A:1029 , LYS A:1033	BINDING SITE FOR RESIDUE GOL A 2003
04	AC4	SOFTWARE	PRO B:141 , SER B:172 , GLN B:279 , PHE B:296 , HOH B:3134 , HOH B:3211 , HOH B:3220	BINDING SITE FOR RESIDUE GOL B 3001
05	AC5	SOFTWARE	PRO B:140 , PRO B:141 , SER B:142 , PRO B:200 , ARG B:201 , HOH B:3129 , HOH B:3253	BINDING SITE FOR RESIDUE GOL B 3002
06	AC6	SOFTWARE	TYR B:86 , THR B:99 , MET B:181 , HOH B:3128	BINDING SITE FOR RESIDUE GOL B 3003
07	AC7	SOFTWARE	ARG B:53 , ASN B:57 , ASN B:102 , GLY B:103 , GLU B:104	BINDING SITE FOR RESIDUE GOL B 3004
08	AC8	SOFTWARE	GLN B:54 , LEU B:158 , CYS B:161 , HOH B:3216 , HOH B:3237	BINDING SITE FOR RESIDUE GOL B 3005
09	AC9	SOFTWARE	THR B:71 , ASN B:72 , GLN B:73 , LYS B:91	BINDING SITE FOR RESIDUE GOL B 3006
10	BC1	SOFTWARE	GLU B:167 , HIS B:219 , ALA B:272 , GLU B:276 , HOH B:3191	BINDING SITE FOR RESIDUE GOL B 3007
11	BC2	SOFTWARE	SER A:1008 , GLU B:122 , LEU B:123 , SER B:124 , HOH B:3245	BINDING SITE FOR RESIDUE GOL B 3008
12	BC3	SOFTWARE	TYR A:1132 , ASN B:138 , THR B:202 , TYR B:204 , CYS B:224 , LEU B:310 , HOH B:3207 , HOH B:3241	BINDING SITE FOR RESIDUE GOL B 3009
13	BC4	SOFTWARE	THR B:214 , LEU B:217	BINDING SITE FOR RESIDUE GOL B 3010
14	BC5	SOFTWARE	GLU B:43 , LYS B:46 , ARG B:47 , HIS B:50 , GLN B:145 , TYR B:165 , HOH B:3145	BINDING SITE FOR RESIDUE GOL B 3011

Asymmetric Unit

No.	Residues
1	B:239	-	B:251

(no "Cis Peptide Bond" information available for 3VF0)

Asymmetric Unit (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035105	R	975	W	VINC_HUMAN	Disease (CMD1W)	121917776	A	R	974	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035105	R	975	W	VINC_HUMAN	Disease (CMD1W)	121917776	A	R	974	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	RAVR1_HUMAN	132-210 59-130	2	B:132-210 B:59-130

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	RAVR1_HUMAN	132-210 59-130	2	B:132-210 B:59-130

Asymmetric Unit (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000211998	1a	ENSE00002146319	chr10:75757872-75758133	262	VINC_HUMAN	1-56	56	0	-	-
1.2a	ENST00000211998	2a	ENSE00001607712	chr10:75802841-75802911	71	VINC_HUMAN	57-80	24	0	-	-
1.4	ENST00000211998	4	ENSE00001024254	chr10:75830428-75830578	151	VINC_HUMAN	80-130	51	0	-	-
1.5	ENST00000211998	5	ENSE00001024245	chr10:75830733-75830841	109	VINC_HUMAN	131-167	37	0	-	-
1.6	ENST00000211998	6	ENSE00001024249	chr10:75832488-75832610	123	VINC_HUMAN	167-208	42	0	-	-
1.7a	ENST00000211998	7a	ENSE00001024263	chr10:75834501-75834661	161	VINC_HUMAN	208-261	54	0	-	-
1.8	ENST00000211998	8	ENSE00001024248	chr10:75842212-75842302	91	VINC_HUMAN	262-292	31	0	-	-
1.9a	ENST00000211998	9a	ENSE00000986356	chr10:75843124-75843271	148	VINC_HUMAN	292-341	50	0	-	-
1.10	ENST00000211998	10	ENSE00000986357	chr10:75848954-75849107	154	VINC_HUMAN	341-392	52	0	-	-
1.11	ENST00000211998	11	ENSE00000986358	chr10:75849781-75849956	176	VINC_HUMAN	393-451	59	0	-	-
1.12	ENST00000211998	12	ENSE00001024262	chr10:75854029-75854219	191	VINC_HUMAN	451-515	65	0	-	-
1.13	ENST00000211998	13	ENSE00000986360	chr10:75855414-75855613	200	VINC_HUMAN	515-581	67	0	-	-
1.14	ENST00000211998	14	ENSE00000986361	chr10:75856962-75857090	129	VINC_HUMAN	582-624	43	0	-	-
1.15a	ENST00000211998	15a	ENSE00000986362	chr10:75860706-75860855	150	VINC_HUMAN	625-674	50	0	-	-
1.16	ENST00000211998	16	ENSE00000986363	chr10:75863578-75863686	109	VINC_HUMAN	675-711	37	0	-	-
1.17c	ENST00000211998	17c	ENSE00000986364	chr10:75864809-75865111	303	VINC_HUMAN	711-812	102	0	-	-
1.18	ENST00000211998	18	ENSE00000986365	chr10:75866988-75867112	125	VINC_HUMAN	812-853	42	0	-	-
1.19b	ENST00000211998	19b	ENSE00000834577	chr10:75868729-75868914	186	VINC_HUMAN	854-915	62	0	-	-
1.20	ENST00000211998	20	ENSE00000709651	chr10:75871667-75871870	204	VINC_HUMAN	916-983	68	1	A:956-982	27
1.21	ENST00000211998	21	ENSE00000709670	chr10:75873942-75874145	204	VINC_HUMAN	984-1051	68	1	A:983-1050	68
1.22	ENST00000211998	22	ENSE00000986366	chr10:75874553-75874657	105	VINC_HUMAN	1052-1086	35	1	A:1051-1085	35
1.23a	ENST00000211998	23a	ENSE00001373600	chr10:75877781-75879910	2130	VINC_HUMAN	1087-1134	48	1	A:1086-1133	48

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:178
 aligned with VINC_HUMAN | P18206 from UniProtKB/Swiss-Prot  Length:1134

    Alignment length:178
                                   966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126        
          VINC_HUMAN    957 PSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ 1134
               SCOP domains d3vf0a_ A: Vinculin                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------W--------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.20  PDB: A:956-982  Exon 1.21  PDB: A:983-1050 UniProt: 984-1051                        Exon 1.22  PDB: A:1051-1085        Exon 1.23a  PDB: A:1086-1133 UniProt: 1087-1134  Transcript 1
                3vf0 A  956 PSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ 1133
                                   965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125

Chain B from PDB  Type:PROTEIN  Length:283
 aligned with RAVR1_HUMAN | Q8IY67 from UniProtKB/Swiss-Prot  Length:606

    Alignment length:283
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316   
         RAVR1_HUMAN     37 PPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALN  319
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh....eeeeeee....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee.....eeeee......hhhhhhhhhhhhh.eeeeeeee......eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee.hhhhh.hhhhh..eeeee.......hhhhhhhhh.......eeeeee.....eeeeeeee..hhhhhhhhhhhhh..ee..ee.eeee.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------RRM  PDB: B:59-130 UniProt: 59-130                                      -RRM  PDB: B:132-210 UniProt: 132-210                                           ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3vf0 B   37 HMLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALN  319
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Four-helical up-and-down bundle (308)

Superfamily: alpha-catenin/vinculin-like (25)

Family: alpha-catenin/vinculin (24)

Protein domain: Vinculin (12)

Human (Homo sapiens) [TaxId: 9606] (9)

d3vf0a_

(no "CATH Domain" information available for 3VF0)

(no "Pfam Domain" information available for 3VF0)

Asymmetric Unit(hide GO term definitions)

Chain A (VINC_HUMAN | P18206)

molecular function
	GO:0003779	actin binding	Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
	GO:0045294	alpha-catenin binding	Interacting selectively and non-covalently with the alpha subunit of the catenin complex.
	GO:0008013	beta-catenin binding	Interacting selectively and non-covalently with the beta subunit of the catenin complex.
	GO:0045296	cadherin binding	Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
	GO:0002162	dystroglycan binding	Interacting selectively and non-covalently with dystroglycan. Dystroglycan is glycoprotein found in non-muscle tissues as well as in muscle tissues, often in association with dystrophin. The native dystroglycan cleaved into two non-covalently associated subunits, alpha (N-terminal) and beta (C-terminal).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0034333	adherens junction assembly	The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments.
	GO:0043297	apical junction assembly	The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents.
	GO:0048675	axon extension	Long distance growth of a single axon process involved in cellular development.
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0007160	cell-matrix adhesion	The binding of a cell to the extracellular matrix via adhesion molecules.
	GO:0090136	epithelial cell-cell adhesion	The attachment of an epithelial cell to another epithelial cell via adhesion molecules.
	GO:0030032	lamellipodium assembly	Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.
	GO:0002009	morphogenesis of an epithelium	The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
	GO:0006928	movement of cell or subcellular component	The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
	GO:0006936	muscle contraction	A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
	GO:0030336	negative regulation of cell migration	Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
	GO:0070527	platelet aggregation	The adhesion of one platelet to one or more other platelets via adhesion molecules.
	GO:0002576	platelet degranulation	The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
	GO:0034394	protein localization to cell surface	A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane.
	GO:0030334	regulation of cell migration	Any process that modulates the frequency, rate or extent of cell migration.
cellular component
	GO:0015629	actin cytoskeleton	The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
	GO:0005912	adherens junction	A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments.
	GO:0005903	brush border	The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
	GO:0030054	cell junction	A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
	GO:0005913	cell-cell adherens junction	An adherens junction which connects a cell to another cell.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0030055	cell-substrate junction	A cell junction that forms a connection between a cell and the extracellular matrix.
	GO:0043034	costamere	Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:1903561	extracellular vesicle	Any vesicle that is part of the extracellular region.
	GO:0005916	fascia adherens	A cell-cell adherens junction that contains the transmembrane protein N-cadherin, which interacts with identical molecules from neighboring cells to form a tight mechanical intercellular link; forms a large portion of the intercalated disc, the structure at which myofibrils terminate in cardiomyocytes.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0090637	inner dense plaque of desmosome	The desmosomal part containing the C-termini of desmoplakins which interact with the keratin intermediate filaments, serving to tether the intermediate filaments to the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0045121	membrane raft	Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
	GO:0090636	outer dense plaque of desmosome	The desmosomal part containing plakoglobins, plakophilins, the N-termini of desmoplakins, as well as the cytoplasmic tails of the desmosomal cadherins, which together attach the plaque to the plasma membrane.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
	GO:1990357	terminal web	An actin-rich cytoskeletal network located beneath the microvilli of the apical plasma membrane of polarized epithelial cells. In addition to actin filaments, the terminal web may contain actin-binding proteins, myosin motor proteins, and intermediate filaments. The terminal web can function as a contractile structure that influences the spatial distribution of microvilli as well as the development and morphogenesis of tissues containing polarized epithelial cells.
	GO:0005915	zonula adherens	A cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells.

Chain B (RAVR1_HUMAN | Q8IY67)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0000398	mRNA splicing, via spliceosome	The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3vf0)

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	Complete Structure
		Biological Unit 1	[ Jena3D ]

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(no "Related Entries Specified in the PDB File" available for 3VF0)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 14)

Sites (14, 14)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (1, 2)

Exons (4, 4)

Sequences/Alignments

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SCOP Domains (1, 1)

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Pfam Domains (0, 0)

Gene Ontology (53, 54)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File