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(-) Description

Title :  THE 6.6 A CRYO-EM STRUCTURE OF THE FULL-LENGTH HUMAN NPC1 IN COMPLEX WITH THE CLEAVED GLYCOPROTEIN OF EBOLA VIRUS
 
Authors :  X. Gong, H. W. Qian, X. H. Zhou, J. P. Wu, T. Wan, Y. Shi, F. Gao, Q. Zhou, N. Y
Date :  01 May 16  (Deposition) - 15 Jun 16  (Release) - 15 Jun 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.56
Chains :  Asym. Unit :  A,C,D,E,F,G,H
Biol. Unit 1:  A,C,E,G  (1x)
Biol. Unit 2:  D,F,H  (1x)
Keywords :  Protein Complex, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Gong, H. Qian, X. Zhou, J. Wu, T. Wan, P. Cao, W. Huang, X. Zhao, X. Wang P. Wang, Y. Shi, G. F. Gao, Q. Zhou, N. Yan
Structural Insights Into The Niemann-Pick C1 (Npc1)-Mediate Cholesterol Transfer And Ebola Infection
Cell V. 165 1467 2016
PubMed-ID: 27238017  |  Reference-DOI: 10.1016/J.CELL.2016.05.022

(-) Compounds

Molecule 1 - NIEMANN-PICK C1 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK 293F
    Expression System Taxid: 9606
    Gene: NPC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - ENVELOPE GLYCOPROTEIN
    Chains: C, E, G
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Cell Line: HI-5
    Expression System Taxid: 266783
    Fragment: UNP RESIDUES 32-188
    Gene: GP
    Mutation: YES
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS (STRAIN KIKWIT-95)
    Organism Taxid: 128951
    Strain: KIKWIT-95
    Synonym: GP1,2,GP
 
Molecule 3 - ENVELOPE GLYCOPROTEIN
    Chains: D, F, H
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Cell Line: HI-5
    Expression System Taxid: 266783
    Fragment: UNP RESIDUES 509-632
    Gene: GP
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS
    Organism Taxid: 128951
    Strain: KIKWIT-95
    Synonym: GP1,2,GP

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ACDEFGH
Biological Unit 1 (1x): AC E G 
Biological Unit 2 (1x):   D F H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2MAN1Ligand/IonALPHA-D-MANNOSE
3NAG21Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2MAN-1Ligand/IonALPHA-D-MANNOSE
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:70binding site for Mono-Saccharide NAG A 1317 bound to ASN A 70
02AC2SOFTWAREASN A:122 , MET A:217binding site for Mono-Saccharide NAG A 1316 bound to ASN A 122
03AC3SOFTWAREASN A:135binding site for Mono-Saccharide NAG A 1322 bound to ASN A 135
04AC4SOFTWAREASN A:158 , SER A:244binding site for Mono-Saccharide NAG A 1303 bound to ASN A 158
05AC5SOFTWAREGLY A:65 , PHE A:68 , CYS A:109 , GLU A:110 , ASN A:222binding site for Poly-Saccharide residues NAG A 1301 through NAG A 1302 bound to ASN A 222
06AC6SOFTWAREASN A:452binding site for Mono-Saccharide NAG A 1323 bound to ASN A 452
07AC7SOFTWAREASN A:459binding site for Mono-Saccharide NAG A 1324 bound to ASN A 459
08AC8SOFTWARETYR A:475 , ASN A:476 , ASN A:478binding site for Poly-Saccharide residues NAG A 1312 through MAN A 1315 bound to ASN A 478
09AC9SOFTWAREGLN A:88 , ASN A:524binding site for Poly-Saccharide residues NAG A 1304 through NAG A 1305 bound to ASN A 524
10AD1SOFTWARELYS A:417 , ASP A:428 , ASP A:551 , ASN A:554 , ASN A:557binding site for Poly-Saccharide residues NAG A 1306 through BMA A 1308 bound to ASN A 557
11AD2SOFTWARETYR A:571 , ASN A:572binding site for Mono-Saccharide NAG A 1309 bound to ASN A 572
12AD3SOFTWAREASN A:598binding site for Poly-Saccharide residues NAG A 1310 through NAG A 1311 bound to ASN A 598
13AD4SOFTWAREASN A:1064binding site for Mono-Saccharide NAG A 1320 bound to ASN A 1064
14AD5SOFTWAREASN A:1072binding site for Mono-Saccharide NAG A 1321 bound to ASN A 1072
15AD6SOFTWARELEU C:70 , VAL C:180 , LYS D:510 , ASN D:563 , THR D:566binding site for Poly-Saccharide residues NAG D 701 through NAG D 702 bound to ASN D 563
16AD7SOFTWAREASP A:501 , ASP A:502 , PHE A:504 , THR E:83 , TRP E:86binding site for Ligand PHE A 503 bound to THR E 83
17AD8SOFTWARELEU E:70 , VAL E:180 , LYS F:510 , ASN F:563 , THR F:566binding site for Poly-Saccharide residues NAG F 701 through NAG F 702 bound to ASN F 563
18AD9SOFTWARELEU G:70 , VAL G:180 , LYS H:510 , ASN H:563 , THR H:566binding site for Poly-Saccharide residues NAG H 701 through NAG H 702 bound to ASN H 563
19AE1SOFTWAREALA A:183 , ASN A:185 , THR A:187 , ASN A:188binding site for Poly-Saccharide residues NAG A 1318 through NAG A 1319

(-) SS Bonds  (19, 19)

Asymmetric Unit
No.Residues
1A:25 -A:74
2A:31 -A:42
3A:63 -A:109
4A:75 -A:113
5A:97 -A:238
6A:100 -A:160
7A:177 -A:184
8A:227 -A:243
9A:468 -A:479
10A:516 -A:533
11C:108 -C:135
12C:121 -C:147
13D:511 -D:556
14E:108 -E:135
15E:121 -E:147
16F:511 -F:556
17G:108 -G:135
18G:121 -G:147
19H:511 -H:556

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:248 -Pro A:249
2Pro A:377 -Val A:378
3Tyr A:423 -Pro A:424
4Ser A:473 -Pro A:474
5Phe A:924 -Asn A:925
6Asp A:948 -Trp A:949
7Glu A:985 -Gly A:986
8Gly A:1034 -Ala A:1035

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JNX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JNX)

(-) Exons   (0, 0)

(no "Exon" information available for 5JNX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1133
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeee.....ee.hhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhh.eeeeeeeeee......eeeeeeeeeeeehhhhhhhhhhhhh..........hhhhhh.......hhhhhhhhhhhhhhh....eeeeee..................................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhh...eeeeeeee......ee..........eehhhhhhhhhhhhhhhhhhhhh.eeee..eeeehhhhh..............hhhhhhh.hhhhhhh.ee....eee..hhhhhhhh........................hhhh.ee.....hhhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhhhhhh.....ee........ee.......hhhhhhhhh.hhhhhhhhh.........................................hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jnx A   23 QSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQPPPPPAPWTILGLDAMYVIMWITYMAFLLVFFGAFFAFEGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYI 1251
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282     ||333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954    || 988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248   
                                                                                                                                                                                                                                                                                                   288|                                                                                                                                                                                                                                                                                                                                                                                                                                                       772|                                                                                                                                                        959|                                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                                                                                                    330                                                                                                                                                                                                                                                                                                                                                                                                                                                        804                                                                                                                                                         984                                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeee............hhh.eeeeeee........hhhhhh..eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eee...eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jnx C   31 RSIPLGVIHNSVLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain D from PDB  Type:PROTEIN  Length:87
                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..............hhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                5jnx D  509 PKCNPNLHYWTTQAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWG  598
                                   518  ||   531       541       551       561       571       581       591       
                                      521|                                                                         
                                       525                                                                         


Chain E from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeee............hhh.eeeeeee........hhhhhh..eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eee...eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jnx E   31 RSIPLGVIHNSVLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain F from PDB  Type:PROTEIN  Length:87
                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..............hhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                5jnx F  509 PKCNPNLHYWTTQAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWG  598
                                   518  ||   531       541       551       561       571       581       591       
                                      521|                                                                         
                                       525                                                                         


Chain G from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeee............hhh.eeeeeee........hhhhhh..eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eee...eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jnx G   31 RSIPLGVIHNSVLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain H from PDB  Type:PROTEIN  Length:87
                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee..............hhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                5jnx H  509 PKCNPNLHYWTTQAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWG  598
                                   518  ||   531       541       551       561       571       581       591       
                                      521|                                                                         
                                       525
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JNX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JNX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JNX)

(-) Gene Ontology  (61, 66)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:948 - Trp A:949   [ RasMol ]  
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    Gly A:1034 - Ala A:1035   [ RasMol ]  
    Gly A:248 - Pro A:249   [ RasMol ]  
    Phe A:924 - Asn A:925   [ RasMol ]  
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  5jnx
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  VGP_EBOZ5 | P87666
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NPC1_HUMAN | O15118: 3gkh 3gki 3gkj 3jd8 5f18 5f1b 5hns 5i31 5kwy
        VGP_EBOZ5 | P87666: 2y6s 3csy 5f1b 5hj3

(-) Related Entries Specified in the PDB File

3jd8
6640 6641