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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN NIEMANN-PICK C1 PROTEIN
 
Authors :  X. Li, J. Wang, G. Blobel
Date :  09 Feb 16  (Deposition) - 29 Jun 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Li, J. Wang, E. Coutavas, H. Shi, Q. Hao, G. Blobel
Structure Of Human Niemann-Pick C1 Protein.
Proc. Natl. Acad. Sci. Usa V. 113 8212 2016
PubMed-ID: 27307437  |  Reference-DOI: 10.1073/PNAS.1607795113

(-) Compounds

Molecule 1 - NIEMANN-PICK C1 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293T
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 341-1246
    Gene: NPC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I31)

(-) Sites  (0, 0)

(no "Site" information available for 5I31)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:468 -A:479
2A:516 -A:533

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Tyr A:423 -Pro A:424
2Ser A:473 -Pro A:474
3Leu A:724 -Gly A:725
4Val A:892 -Leu A:893
5Ala A:938 -Pro A:939
6Val A:959 -Asp A:960
7Arg A:978 -Cys A:979

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I31)

(-) Exons   (0, 0)

(no "Exon" information available for 5I31)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:758
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhh....eeeeeeee.......ee........ee.hhhhhhhhhhhhhhhhhhhhh..ee....ee....................hhhhhhh.hhhhhh.............hhhhhh...............................ee.....hhhhh.eeeeeeee......hhhhhhhhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh........................hhhhhhhhhhhh..........hhhhhhh.....hhhhhh.....................................................hhhhhhhhhhhhhhhh..........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i31 A  342 WGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKLLLKDWMRPIVIAIFVGVLSFSIAVSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLETSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHIKGSRVERAEEALAHMGSSVFSGITLTKFGAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPV 1246
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641|      667       677       687       697       707      |726       736       746       756       766       776       786     ||831       841       851||     871       881       891  ||   906       916       926       936       946       956       966       976    ||1025      1035      1045      1055||    1085      1095      1105      1115      1125      1135      1145      1155      1165     |1183      1193      1203    ||1218      1228      1238        
                                                                                                                                                                                                                                                                                                                                     641|                                                     714|                                                                 792|                     852|                            894|                                                                              981|                               1056|                                                                                          1171|                        1208|                                
                                                                                                                                                                                                                                                                                                                                      658                                                      724                                                                  828                      863                             900                                                                              1021                                1077                                                                                           1180                         1214
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I31)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I31)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I31)

(-) Gene Ontology  (47, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5i31)
 
  Sites
(no "Sites" information available for 5i31)
 
  Cis Peptide Bonds
    Ala A:938 - Pro A:939   [ RasMol ]  
    Arg A:978 - Cys A:979   [ RasMol ]  
    Leu A:724 - Gly A:725   [ RasMol ]  
    Ser A:473 - Pro A:474   [ RasMol ]  
    Tyr A:423 - Pro A:424   [ RasMol ]  
    Val A:892 - Leu A:893   [ RasMol ]  
    Val A:959 - Asp A:960   [ RasMol ]  
 

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  5i31
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  NPC1_HUMAN | O15118
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NPC1_HUMAN | O15118: 3gkh 3gki 3gkj 3jd8 5f18 5f1b 5hns 5jnx 5kwy

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5I31)