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(-) Description

Title :  STRUCTURAL BASIS OF EBOLA VIRUS ENTRY: VIRAL GLYCOPROTEIN BOUND TO ITS ENDOSOMAL RECEPTOR NIEMANN-PICK C1
 
Authors :  H. Wang, Y. Shi, J. Song, J. Qi, G. Lu, J. Yan, G. F. Gao
Date :  30 Nov 15  (Deposition) - 20 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Ebola Virus, Glycoprotein, Niemann-Pick C1, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wang, Y. Shi, J. Song, J. Qi, G. Lu, J. Yan, G. F. Gao
Ebola Viral Glycoprotein Bound To Its Endosomal Receptor Niemann-Pick C1.
Cell V. 164 258 2016
PubMed-ID: 26771495  |  Reference-DOI: 10.1016/J.CELL.2015.12.044

(-) Compounds

Molecule 1 - NIEMANN-PICK C1 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 374-620
    Gene: NPC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5F18)

(-) Sites  (0, 0)

(no "Site" information available for 5F18)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:96 -A:107
2A:144 -A:161

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:28 -Pro A:29
2Tyr A:51 -Pro A:52
3Ser A:101 -Pro A:102

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F18)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F18)

(-) Exons   (0, 0)

(no "Exon" information available for 5F18)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...eeeeeeeee......eee........eeehhhhhhhhhhhhhhhhhhhhh.eeee..eeeehhhhh..............hhhhhhh.hhhhhh..ee....eeehhhhhhhhhh........................hhhhhee.....hhhhh.eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f18 A  12 PSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFT 232
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F18)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F18)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F18)

(-) Gene Ontology  (47, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:28 - Pro A:29   [ RasMol ]  
    Ser A:101 - Pro A:102   [ RasMol ]  
    Tyr A:51 - Pro A:52   [ RasMol ]  
 

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  5f18
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  NPC1_HUMAN | O15118
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NPC1_HUMAN | O15118: 3gkh 3gki 3gkj 3jd8 5f1b 5hns 5i31 5jnx 5kwy

(-) Related Entries Specified in the PDB File

5f1b