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(-) Description

Title :  CRYSTAL STRUCTURE OF HOST-PRIMED EBOLA VIRUS GP, GPCL.
 
Authors :  Z. A. Bornholdt, M. L. Fusco, E. O. Saphire
Date :  12 Jan 16  (Deposition) - 09 Mar 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  C,D,I,J  (3x)
Biol. Unit 2:  A,B,E,F,G,H,K,L,M,N,O,P  (1x)
Keywords :  Ebola Virus, Eov, Ebolavirus, Gp, Glycoprotein, Gpcl, Cleaved, Primed, Proteolytically, Receptor Binding Pocket, Crest, Trough, Mr72, Kz52, Broadly Neutralizing, Viral Protein-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. A. Bornholdt, E. Ndungo, M. L. Fusco, S. Bale, A. I. Flyak, J. E. Crowe K. Chandran, E. O. Saphire
Host-Primed Ebola Virus Gp Exposes A Hydrophobic Npc1 Receptor-Binding Pocket, Revealing A Target For Broadly Neutralizing Antibodies.
Mbio V. 7 02154 2016
PubMed-ID: 26908579  |  Reference-DOI: 10.1128/MBIO.02154-15

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN
    Chains: C, G, K, O
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Taxid: 7215
    Fragment: UNP RESIDUES 32-194
    Gene: GP
    Organism Scientific: EBOLA VIRUS SP.
    Organism Taxid: 205488
    Synonym: GP1,2,GP
 
Molecule 2 - ENVELOPE GLYCOPROTEIN
    Chains: D, H, L, P
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Taxid: 7215
    Fragment: UNP RESIDUES 502-637
    Gene: GP
    Organism Common: ZEBOV
    Organism Scientific: ZAIRE EBOLAVIRUS
    Organism Taxid: 128951
    Strain: KIKWIT-95
    Synonym: GP1,2,GP
 
Molecule 3 - KZ52 ANTIBODY FRAGMENT
    Chains: E, I, M, A
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Taxid: 7215
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - KZ52 ANTIBODY FRAGMENT
    Chains: F, J, N, B
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Taxid: 7215
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (3x):   CD    IJ      
Biological Unit 2 (1x): AB  EFGH  KLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 28)

Asymmetric Unit (3, 28)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN16Ligand/IonALPHA-D-MANNOSE
3NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 21)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 21)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2MAN12Ligand/IonALPHA-D-MANNOSE
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU C:156 , GLN D:508 , ASN D:563 , THR D:566 , LYS J:30 , SER J:52 , THR J:53binding site for Poly-Saccharide residues NAG D 701 through MAN D 707 bound to ASN D 563
2AC2SOFTWARELYS F:30 , SER F:52 , THR F:53 , LEU G:70 , GLN H:508 , ASN H:563 , THR H:566binding site for Poly-Saccharide residues NAG H 701 through MAN H 707 bound to ASN H 563
3AC3SOFTWARELYS K:155 , GLN L:508 , ASN L:563 , LYS N:30 , SER N:52 , THR N:53binding site for Poly-Saccharide residues NAG L 701 through MAN L 707 bound to ASN L 563
4AC4SOFTWARELYS B:30 , THR B:53 , GLN P:508 , ASN P:563 , THR P:566binding site for Poly-Saccharide residues NAG P 701 through MAN P 707 bound to ASN P 563

(-) SS Bonds  (33, 33)

Asymmetric Unit
No.Residues
1A:22 -A:92
2A:142 -A:208
3B:23 -B:88
4C:53 -D:609
5C:108 -C:135
6C:121 -C:147
7D:511 -D:556
8D:601 -D:608
9E:22 -E:92
10E:142 -E:208
11F:23 -F:88
12G:53 -H:609
13G:108 -G:135
14G:121 -G:147
15H:511 -H:556
16H:601 -H:608
17I:22 -I:92
18I:142 -I:208
19J:23 -J:88
20K:53 -L:609
21K:108 -K:135
22K:121 -K:147
23L:511 -L:556
24L:601 -L:608
25M:22 -M:92
26M:142 -M:208
27N:23 -N:88
28N:134 -N:194
29O:53 -P:609
30O:108 -O:135
31O:121 -O:147
32P:511 -P:556
33P:601 -P:608

(-) Cis Peptide Bonds  (25, 25)

Asymmetric Unit
No.Residues
1Gly D:598 -Gly D:599
2Phe E:148 -Pro E:149
3Glu E:150 -Pro E:151
4Ser F:7 -Pro F:8
5Ala F:94 -Pro F:95
6Tyr F:140 -Pro F:141
7Gly H:598 -Gly H:599
8Phe I:148 -Pro I:149
9Glu I:150 -Pro I:151
10Ser J:7 -Pro J:8
11Ala J:94 -Pro J:95
12Tyr J:140 -Pro J:141
13Gly L:598 -Gly L:599
14Phe M:148 -Pro M:149
15Glu M:150 -Pro M:151
16Ser N:7 -Pro N:8
17Ala N:94 -Pro N:95
18Tyr N:140 -Pro N:141
19Gln P:521 -Asp P:522
20Gly P:598 -Gly P:599
21Phe A:148 -Pro A:149
22Glu A:150 -Pro A:151
23Ser B:7 -Pro B:8
24Ala B:94 -Pro B:95
25Tyr B:140 -Pro B:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HJ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HJ3)

(-) Exons   (0, 0)

(no "Exon" information available for 5HJ3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eee...eeeeee.....eeee.........ee...ee.....eeeeee..eeeeehhhheeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 A    1 EVQLLESGGGLVKPGGSLRLSCAASGFTLINYRMNWVRQAPGKGLEWVSSISSSSSYIHYADSVKGRFTISRDNAENSLYLQMNSLRAEDTAVYYCVREGPRATGYSMADVFDIWGQGTMVTVSSASTKGPSVFPLGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVICNVNHKPSNTKVDKKVEP  227
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118     ||144       154|||    169|      180|      191|      216     ||  
                                                                              52A                            82A||               100A|||||||                     124|          154|||    169|      180|      191|            222|  
                                                                                                              82B|                100B||||||                      141           156||     171       182       207             225  
                                                                                                               82C                 100C|||||                                     157|                                              
                                                                                                                                    100D||||                                      162                                              
                                                                                                                                     100E|||                                                                                       
                                                                                                                                      100F||                                                                                       
                                                                                                                                       100G|                                                                                       
                                                                                                                                        100H                                                                                       


Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee....ee....ee.eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeeee......eee.hhhhhh..eeeeeeeeeee...............eeeee.........eeeeeeeeeehhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 B    1 ELVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKSYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTKVEIKRTVAAPSVFPSDEQLKSGTASVVCLLNNFYPREAKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEHQGLRSFNR  211
                                    10        20       27C|||     34        44        54        64        74        84        94       104       114 ||    127       137      |151       161       171       181       191   ||  208   
                                                     27A|||||                                                                                      116|                     144|                                           195| 202|   
                                                      27B||||                                                                                       120                      149                                            198  208   
                                                       27C|||                                                                                                                                                                          
                                                        27D||                                                                                                                                                                          
                                                         27E|                                                                                                                                                                          
                                                          27F                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eeee.............hhh.eeeeeee.hhhh...hhhhhhh.eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eeee..eee.........eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 C   31 RSIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQA  189
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180         


Chain D from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee........................eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 D  504 IVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPH  613
                                   513       523       533       543       553       563       573       583       593       603       613


Chain E from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eeeee......eeeeeeeeee.....eeee.....eee...ee.....eeeeeeeee..eeeeehhhheeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5hj3 E    1 EVQLLESGGGLVKPGGSLRLSCAASGFTLINYRMNWVRQAPGKGLEWVSSISSSSSYIHYADSVKGRFTISRDNAENSLYLQMNSLRAEDTAVYYCVREGPRATGYSMADVFDIWGQGTMVTVSSASTKGPSVFPLSTSGGTAALGCLVKDYFPEPVTVSWNSTSGVHTFPAVLQSSGLYSLSSVVTVPICNVNHKPSNTKVDK  221
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118     ||135       145       156|||| ||174     ||185       207       217    
                                                                              52A                            82A||               100A|||||||                     124||                  154||||| ||      180|         194|              
                                                                                                              82B|                100B||||||                      130|                   156|||| ||       182          207              
                                                                                                               82C                 100C|||||                       133                    157||| ||                                     
                                                                                                                                    100D||||                                               162|| ||                                     
                                                                                                                                     100E|||                                                163| ||                                     
                                                                                                                                      100F||                                                 167 ||                                     
                                                                                                                                       100G|                                                   169|                                     
                                                                                                                                        100H                                                    171                                     


Chain F from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee....ee....ee.eeeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee......ee...eeeeee......eeeee..hhhhhh...eeeeeeeeee..........eeeee.........eeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 F    1 ELVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKSYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKWKVNSQESVTEQDSKDSTYSLSSTLTLSHKVYAKSFNR  211
                                    10        20       27C|||     34        44        54        64        74        84        94       104       114       124       134       144|| ||  163       173       189   ||    
                                                     27A|||||                                                                                                                   145| ||                     182| 193|    
                                                      27B||||                                                                                                                    148 ||                      189  207    
                                                       27C|||                                                                                                                      150|                                  
                                                        27D||                                                                                                                       158                                  
                                                         27E|                                                                                                                                                            
                                                          27F                                                                                                                                                            


Chain G from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eeee.............hhh.eeeeeee.hhhh...hhhhhhh.eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eee...eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 G   31 RSIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        


Chain H from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee........................eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhh...ee.......ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 H  504 IVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPH  613
                                   513       523       533       543       553       563       573       583       593       603       613


Chain I from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eeeee..eeeeeee.....eeee........eee...ee.....eeeeeee..eeeeehhhheeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 I    1 EVQLLESGGGLVKPGGSLRLSCAASGFTLINYRMNWVRQAPGKGLEWVSSISSSSSYIHYADSVKGRFTISRDNAENSLYLQMNSLRAEDTAVYYCVREGPRATGYSMADVFDIWGQGTMVTVSSASTKGPSVFPLALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTICNVNHKPSNTKVDKK  222
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118      |142       152 ||||  167 ||    178 ||    189  ||   213         
                                                                              52A                            82A||               100A|||||||                      125|           154|||    169|      180|       192|               
                                                                                                              82B|                100B||||||                       140            156||     171       182        207               
                                                                                                               82C                 100C|||||                                       157|                                            
                                                                                                                                    100D||||                                        162                                            
                                                                                                                                     100E|||                                                                                       
                                                                                                                                      100F||                                                                                       
                                                                                                                                       100G|                                                                                       
                                                                                                                                        100H                                                                                       


Chain J from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeeee....eeeeee.....ee....ee.eeeeee......eeeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....e..........eeeee.........eeeeeeeeeehhhhhh...eeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 J    1 ELVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKSYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVT  206
                                    10        20       27C|||     34        44        54        64        74        84        94       104       114       124       134       144||     157       167       177       187       197         
                                                     27A|||||                                                                                                                   145|                                                         
                                                      27B||||                                                                                                                    149                                                         
                                                       27C|||                                                                                                                                                                                
                                                        27D||                                                                                                                                                                                
                                                         27E|                                                                                                                                                                                
                                                          27F                                                                                                                                                                                


Chain K from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.............hhh.eeeeeee.hhhh...hhhhhhh.eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eeee..eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 K   32 SIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       


Chain L from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee........................eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhh...ee.......ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 L  504 IVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPH  613
                                   513       523       533       543       553       563       573       583       593       603       613


Chain M from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee............eeee...eeeee........eee..eeeeee.....eeee........eee...ee.....eeeeeee..hhhhhh.eeeeehhhheeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 M    1 EVQLLESGGGLVKPGGSLRLSCAASGFTLINYRMNWVRQAPGKGLEWVSSISSSSSYIHYADSVKGRFTISRDNAENSLYLQMNSLRAEDTAVYYCVREGPRATGYSMADVFDIWGQGTMVTVSSASTKGPSVFPGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGICNVNHKPSNTKVDKK  222
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108       118    || 145       156||     171       182       192      |209       219   
                                                                              52A                            82A||               100A|||||||                    123|          154|||    169|      180|              199|               
                                                                                                              82B|                100B||||||                     141           156||     171       182               207               
                                                                                                               82C                 100C|||||                                    157|                                                   
                                                                                                                                    100D||||                                     162                                                   
                                                                                                                                     100E|||                                                                                           
                                                                                                                                      100F||                                                                                           
                                                                                                                                       100G|                                                                                           
                                                                                                                                        100H                                                                                           


Chain N from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                            
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee....ee....ee.eeeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee......ee...eeeeee.....eeeee..hhhhhh..eeeeeeeeeee.....ee..eeeee.........eeeeeeeeeehhhhhh...eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 N    1 ELVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKSYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSAPLTFGGGTKVEIKRTVAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREQWKVNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGPVTKSFNR  211
                                    10        20       27C|||     34        44        54        64        74        84        94       104     ||115       125       135       148 ||    165       175       185       195    || 208   
                                                     27A|||||                                                                                110|                            143|  ||                                       200|       
                                                      27B||||                                                                                 112                             147  ||                                        204       
                                                       27C|||                                                                                                                    150|                                                  
                                                        27D||                                                                                                                     158                                                  
                                                         27E|                                                                                                                                                                          
                                                          27F                                                                                                                                                                          


Chain O from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.............hhh.eeeeeee.hhhh...hhhhhhh.eeee......eee..eee.eeeeeeeeee....................eeeeeeeeee......eeee....eeee..eee.........eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 O   32 SIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ  188
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       


Chain P from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee........................eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhh...ee.......ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                5hj3 P  504 IVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPH  613
                                   513       523       533       543       553       563       573       583       593       603       613
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HJ3)

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(no "CATH Domain" information available for 5HJ3)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (23, 42)

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  VGP_EBOZM | Q05320
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VGP_EBOZ5 | P87666: 2y6s 3csy 5f1b 5jnx
        VGP_EBOZM | Q05320: 2ebo 2rlj 3csy 5fhc 5jq3 5jq7 5jqb 5kel 5kem 5ken

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HJ3)