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(-) Description

Title :  CRYO-EM STRUCTURE OF A FULL ARCHAEAL RIBOSOMAL TRANSLATION INITIATION COMPLEX IN THE P-IN CONFORMATION
 
Authors :  P. -D. Coureux, E. Schmitt, Y. Mechulam
Date :  13 Apr 16  (Deposition) - 07 Dec 16  (Release) - 08 Feb 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  5.34
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. D. Coureux, C. Lazennec-Schurdevin, A. Monestier, E. Larquet, L. Cladiere, B. P. Klaholz, E. Schmitt, Y. Mechulam
Cryo-Em Study Of Start Codon Selection During Archaeal Translation Initiation.
Nat Commun V. 7 13366 2016
PubMed-ID: 27819266  |  Reference-DOI: 10.1038/NCOMMS13366

(-) Compounds

Molecule 1 - 16S RIBOSOMAL RNA
    Chains2
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details16S MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 2 - 30S RIBOSOMAL PROTEIN US3
    ChainsZ
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US3 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 3 - 50S RIBOSOMAL PROTEIN UL30
    Chains3
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details50S RIBOSOMAL PROTEIN L7AE MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 4 - 30S RIBOSOMAL PROTEIN US10
    ChainsL
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US10 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 5 - 30S RIBOSOMAL PROTEIN US13
    ChainsO
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US13 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 6 - 30S RIBOSOMAL PROTEIN US14
    ChainsP
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US14 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 7 - 30S RIBOSOMAL PROTEIN ES17
    ChainsS
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES17 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 8 - 30S RIBOSOMAL PROTEIN US19
    ChainsT
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US19 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 9 - 30S RIBOSOMAL PROTEIN ES19
    ChainsU
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES19 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 10 - 30S RIBOSOMAL PROTEIN ES28
    ChainsX
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES28 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 11 - 30S RIBOSOMAL PROTEIN ES27
    ChainsY
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES27 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 12 - 30S RIBOSOMAL PROTEIN US7
    ChainsH
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US5 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 13 - 30S RIBOSOMAL PROTEIN US9
    ChainsK
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US9 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 14 - 30S RIBOSOMAL PROTEIN US11
    ChainsM
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US11 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 15 - 30S RIBOSOMAL PROTEIN US12
    ChainsN
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US12 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 16 - 30S RIBOSOMAL PROTEIN US15
    ChainsQ
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US15 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 17 - 30S RIBOSOMAL PROTEIN US17
    ChainsR
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US17 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 18 - 30S RIBOSOMAL PROTEIN US3
    ChainsA
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US3 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 19 - 30S RIBOSOMAL PROTEIN US2
    ChainsB
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US2 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 20 - 30S RIBOSOMAL PROTEIN ES24
    ChainsV
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES24 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 21 - 30S RIBOSOMAL PROTEIN ES27
    ChainsW
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES27 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 22 - 30S RIBOSOMAL PROTEIN US4
    ChainsD
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US4 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 23 - 30S RIBOSOMAL PROTEIN ES4
    ChainsE
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES4 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 24 - 30S RIBOSOMAL PROTEIN US5
    ChainsF
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US5 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 25 - 30S RIBOSOMAL PROTEIN ES6
    ChainsG
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES6 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 26 - 30S RIBOSOMAL PROTEIN US8
    ChainsI
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN US8 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 27 - 30S RIBOSOMAL PROTEIN ES8
    ChainsJ
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN ES8 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 28 - 30S RIBOSOMAL PROTEIN SX
    ChainsC
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN SX MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 29 - 30S RIBOSOMAL PROTEIN EL41
    Chains0
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other Details30S RIBOSOMAL PROTEIN EL41 MODEL FROM PYROCOCCUS FURIOSUS (PDB CODE 4V6U) USED FOR FITTING
 
Molecule 30 - MRNA
    Chains5
    EngineeredYES
    Organism ScientificPYROCOCCUS
    Organism Taxid2260
    SyntheticYES
 
Molecule 31 - AIF1
    Chains1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
 
Molecule 32 - INITIATOR MET-TRNA FMET FROM E. COLI (A1U72 VARIANT)
    Chains4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    Other DetailsTRNA MODEL FROM SULFOLOBUS SOLFATARICUS (PDB CODE 3V11) USED FOR FITTING
 
Molecule 33 - AIF1A
    Chains6
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
 
Molecule 34 - AIF2-GAMMA
    Chains7
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other DetailsAIF2-GAMMA MODEL FROM SULFOLOBUS SOLFATARICUS (PDB CODE 3V11) USED FOR FITTING
 
Molecule 35 - AIF2-BETA
    Chains8
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other DetailsAIF2-BETA MODEL FROM SULFOLOBUS SOLFATARICUS (PDB CODE 3V11) USED FOR FITTING
 
Molecule 36 - AIF2-ALPHA
    Chains9
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS ABYSSI GE5
    Organism Taxid272844
    Other DetailsAIF2-ALPHA MODEL FROM SULFOLOBUS SOLFATARICUS (PDB CODE 3V11) USED FOR FITTING

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324252627282930313233343536
Asymmetric/Biological Unit ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 64)

Asymmetric/Biological Unit (8, 64)
No.NameCountTypeFull Name
15MU1Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
2GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3H2U1Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
4MET1Mod. Amino AcidMETHIONINE
5MG1Ligand/IonMAGNESIUM ION
6OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
7UNK57Mod. Amino Acid
8ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREA 4:77 , TYR 7:51 , ARG 7:219 , ARG 7:280 , PHE 7:281 , GLY 7:282binding site for residue MET 4 101
2AC2SOFTWARETHR 7:23 , LYS 7:36 , THR 7:46 , GNP 7:502binding site for residue MG 7 501
3AC3SOFTWAREVAL 7:18 , ASP 7:19 , GLY 7:21 , LYS 7:22 , THR 7:23 , THR 7:24 , TRP 7:33 , LYS 7:36 , MET 7:45 , THR 7:46 , ALA 7:94 , GLY 7:96 , ASN 7:149 , LYS 7:150 , ASP 7:152 , VAL 7:153 , ALA 7:185 , LEU 7:186 , MG 7:501binding site for residue GNP 7 502

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
11:64 -1:66

(-) Cis Peptide Bonds  (15, 15)

Asymmetric/Biological Unit
No.Residues
1Asp 3:58 -Pro 3:59
2Glu L:92 -Asp L:93
3Ser O:144 -Arg O:145
4Ile U:23 -Pro U:24
5Lys X:68 -Ser X:69
6Gln Y:3 -Lys Y:4
7Asp Q:68 -Pro Q:69
8Lys A:12 -Trp A:13
9Gly G:52 -Lys G:53
10Lys G:53 -Glu G:54
11Phe G:55 -Pro G:56
12Trp J:4 -Gln J:5
13Gln J:5 -Gly J:6
14Unk C:27 -Unk C:28
15Lys 7:64 -Pro 7:65

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JBH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JBH)

(-) Exons   (0, 0)

(no "Exon" information available for 5JBH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain 0 from PDB  Type:PROTEIN  Length:22
                                                       
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                5jbh 0    1 MRWKWIKKRIRRLKRQRKKERG   22
                                    10        20  

Chain 1 from PDB  Type:PROTEIN  Length:80
                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.......eeeee.......hhhhhhhhhhhhhh..eeee..eeee...hhhhhhhhhhhh..hhh.eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                5jbh 1   23 EEQKIKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTVKDNTIELQGDHRKKVAEELVKMGFSRDSIEIR  102
                                    32        42        52        62        72        82        92       102

Chain 2 from PDB  Type:RNA  Length:1495
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                5jbh 2    1 AUUCCGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUCCGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCCCGCCCGAGGAUGCGGCGGCGGCCGAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAUGCGGGAAACCGCGACGGGGGGACCCCCAGUGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGUAAUACCGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGGCCCGUAAGUCCCUGGCGAAAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGACCGGGAGAGGCCGGGGGUACCCCCGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGCGCGGAAGGCCAGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGCCGUAGGGAAGCCGUUAAGCCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCACUACAAGGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAACCUCACCGGGGGCGACGGCAGGAUGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGAGGUGCAUGGCCGCCGUCAGCUCGUACCGUGAGGCGUCCACUUAAGUGUGGUAACGAGCGAGACCCGCGCCCCCAGUUGCCAGUCCCUCCCGCUCGGGAGGAGGCACUCUGGGGGGACUGCCGGCGAUAAGCCGGAGGAAGGGGCGGGCGACGGUAGGUCAGUAUGCCCCGAAACCCCCGGGCUACACGCGCGCUACAAUGGGCGGGACAAUGGGACCCGACCUCGAAAGGGGAAGGGAAUCCCCUAAACCCGCCCUCAGUUCGGAUCGCGGGCUGCAACUCGCCCGCGUGAAGCUGGAAUCCCUAGUACCCGCGUGUCAUCAUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCACUCCACCCGAGCGGAGUCCGGGUGAGGCCUGAUCUCCUUCGGGAGGUCAGGUCGAGCCCGGGCUCCGUGAGGGGGGAGAAGUCGUAACAAGGUAACCGUAGGGGAACCUACGGCUCGAUCACCUCCU 1495
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490     

Chain 3 from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhh..eehhhhhh..........eeee..........hhhhhh........ee.hhhhhhhhh.......eee........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh 3    1 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK  123
                                    10        20        30        40        50        60        70        80        90       100       110       120   

Chain 4 from PDB  Type:RNA  Length:76
                                                                                                             
                5jbh 4    2 GCGGGGUGGAGCAGCCUGGuAGCUCGUCGGGcUCAUAACCCGAAGAUCGUCGGxUCAAAUCCGGCCCCCGCUACCA   77
                                    11        21        31 |      41        51   |    61        71      
                                              21-H2U      33-OMC                55-5MU                  

Chain 5 from PDB  Type:RNA  Length:18
                                                   
                5jbh 5  805 UGGAGGUGAUUUAAAUGC  822
                                   814        

Chain 6 from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeee..eeeeee....eeeee.hhhhhh........eeeeee.......eeeeeee.hhhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5jbh 6   13 VIRVPLPEGNQLFGVVEQALGAGWMDVRCEDGKIRRCRIPGKLRRRVWIRVGDLVIVQPWPVQSDKRGDIVYRYTQTQVDWLLRKGKITQEFLTG  107
                                    22        32        42        52        62        72        82        92       102     

Chain 7 from PDB  Type:PROTEIN  Length:409
                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.......hhhhhhhhh........hhhhhh.....eeeeeeeee.........................eeeeeeeeee......hhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh...eeeee.hhhhh..hhhhhhhhhhhhhh...................hhhhhhhhhhhh............eeeeeeeee......hhhhh..eeeeeeeee..ee...eeeee...ee......ee..eeee..eeee..ee..ee.....eeee...hhhhhh.......eeee......eeeeeeeeeee....................eeeeee....eeeee......eeeeeeeeeee......eeeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh 7    7 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLVEI  415
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         

Chain 8 from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eee....eee.hhhhhhhh...hhhhhhhhhhhhhh..eee.....eee....hhhhhhhhhhhhhhhhh.........eee......eeeee.....eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh 8    3 SEKEYVEMLDRLYSKLPQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKPL  139
                                    12      ||30        40        50        60        70        80        90       100       110       120       130         
                                           19|                                                                                                               
                                            28                                                                                                               

Chain 9 from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeee..eeeeee.....eeeeehhhhh.............eeeeeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhh.....hhhhhhhh....eeeeeeeeee....hhhhhhhhhhhhhh...........eeeeee....eeeeeeee.hhhhhhhhhhhhhhhhhhhhh....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh 9    2 IYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKILIDAGVPEIWVKPLLEEASRKVKMSGLITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVV  264
                                    11        21        31        41     || 56        66        76        86        96       106       116       126       136       146       156       166  ||   181       191       201       211       221       231       241       251       261   
                                                                        47|                                                                                                                 169|                                                                                         
                                                                         53                                                                                                                  175                                                                                         

Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee...........eeeee........eeee......hhhhhh...eeeeeeee....eeeeeeeee.hhhhhhhhh........eeeeee.....eeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.eeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh A    9 TRDKWKLKQWYIIYAPDFFGGVEVGLTPADDPEKVLNRVVEVTLKDVTGDFTKSHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRKTTRIDGIFNITTKDGYKLRVMAMAIAMRRIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQVIA  198
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198

Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh...........hhhh.eeee.....eee.hhhhhhhhhhhhhhhhhh....eee......hhhhhhhhhhhhh.........................eeee.....hhhhhhhhhhh...eee....................hhhhhhhhhhhhhhhhhhhhh..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh B    1 MADEYLVPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPVEEFEMKIVRR  202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  

Chain C from PDB  Type:PROTEIN  Length:57
                                                                                          
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                5jbh C    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   57
                            ||||||||10||||||||20||||||||30||||||||40||||||||50|||||||
                            1-UNK|||10-UNK|||19-UNK|||28-UNK|||37-UNK|||46-UNK|||55-UNK
                             2-UNK|||11-UNK|||20-UNK|||29-UNK|||38-UNK|||47-UNK|||56-UNK
                              3-UNK|| 12-UNK|| 21-UNK|| 30-UNK|| 39-UNK|| 48-UNK|| 57-UNK
                               4-UNK|  13-UNK|  22-UNK|  31-UNK|  40-UNK|  49-UNK|   
                                5-UNK   14-UNK   23-UNK   32-UNK   41-UNK   50-UNK   
                                 6-UNK   15-UNK   24-UNK   33-UNK   42-UNK   51-UNK  
                                  7-UNK   16-UNK   25-UNK   34-UNK   43-UNK   52-UNK 
                                   8-UNK   17-UNK   26-UNK   35-UNK   44-UNK   53-UNK
                                    9-UNK   18-UNK   27-UNK   36-UNK   45-UNK   54-UNK

Chain D from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh......hhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..ee..ee...............ee...........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh D    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAKQGGEA  180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178  

Chain E from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................eehhhhhhh......hhhhhhhhhhhh..ee..ee......ee....eeee....eeeeeee.....eeeeee........ee....eeee...eeee.......ee............eeeeee....eeeeeee.....eeee........eeeeee..........eeeee......eeee...eeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh E    3 RKGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKPKISLP  243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 

Chain F from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.......hhhhhhhh.....hhhhhh.......hhhhhhhh.........eeeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeee.hhhhhhhhhhhhhhhhee......................eeeee..eeeeee..........hhhhhhhhhhhh....eee......hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh F    1 MSQEWKEYAKRVLDEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNTNRVAISPEM  217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       

Chain G from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....eeeeeee...hhhhh.......ee......................eeeeeee..................ee................ee............eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh G    1 MATFKLVISDPKSGIAKQVEITGAETEKLIGKRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPGFRPKEKGERRKKTVRGNTISPEIVQVNVKLVY  125
                                    10        20        30        40        50        60        70        80        90       100       110       120     

Chain H from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh....eehhhee.......................................hhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh......eeee..........eeee.hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh H    2 AKPLNERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR  215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    

Chain I from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh....eeeee....eeeeee...............ee...hhhhhhhhhh......eeeee....ee.hhhhhhhh..eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh I    2 TLLDPLANALSHITNSERVGKREVYIKPASKLIGEVLRVMQKYGYIGEFEFIDDGRAGVYRVQLLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY  130
                                    11        21        31        41        51        61        71        81        91       101       111       121         

Chain J from PDB  Type:PROTEIN  Length:127
                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhh.......ee.....eeeee.....eeeee.ee................eeee.......hhhhhh......eeee...eeee...........eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh J    1 MAIWQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFDKSGKGRKVRIIRVIENPANRQFARRNIITKGAIIETEIGKAKVTSRPGQDGVVNAILLEE  127
                                    10        20        30        40        50        60        70        80        90       100       110       120       

Chain K from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..eeeeeeeee....eee..ee.hhh.hhhhhhhhhhhhhhhhhhhhhheeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh K    1 MRIIQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEWTGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR  135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     

Chain L from PDB  Type:PROTEIN  Length:102
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee.hhhhhhhhhhhhhhhh.....ee...eeeeeeeeeeeee..........eeeeeeeeeeeeeeeeehhhhhhhhh........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                5jbh L    1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS  102
                                    10        20        30        40        50        60        70        80        90       100  

Chain M from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee..eeeee....eeeee.........eeee..............hhhhhhhhhhhhhhhhhheeeeeeeee............hhhhhhhhhhhhh.eeeeeee.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh M    5 QVNIKKKEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV  137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   

Chain N from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........eeeeeeeeeee.........eeeeeeee.....eeeee....hhhhh.....eeeeee................eee.......hhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh N    3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR  147
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142     

Chain O from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee.....ee...hhhhhhhh.....hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh........eee...eee...hhhhhhhhhhhhhhhhhhhh................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh O    1 MANFRHIVRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRRGQTVGVSRKKK  148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        

Chain P from PDB  Type:PROTEIN  Length:56
                                                                                         
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ......................................hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                5jbh P    1 MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKYE   56
                                    10        20        30        40        50      

Chain Q from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhh........hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jbh Q    1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYDPETAKLLVR  158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        

Chain R from PDB  Type:PROTEIN  Length:113
                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................eeee..eee.......eeeeeeeeeeee....eeeeeeeeeeee...........eeeeee.........eeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                5jbh R    1 MMRDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVLERAEERR  113
                                    10        20        30        40        50        60        70        80        90       100       110   

Chain S from PDB  Type:PROTEIN  Length:67
                                                                                                    
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                5jbh S    1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKIL   67
                                    10        20        30        40        50        60       

Chain T from PDB  Type:PROTEIN  Length:111
                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh....hhhhhhhhhh.......hhhhhhhhhhh.......ee..............eeeee....eeeee.hhhhh..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                5jbh T    6 FRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHG  116
                                    15        25        35        45        55        65        75        85        95       105       115 

Chain U from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh......hhhhhh...........hhhhhhhhhhhhhhhhhhh...hhhhhhhh...ee.......ee...hhhhhhhhhhhhhhh..ee.......eehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5jbh U    1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPEKFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKKELEEII  144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    

Chain V from PDB  Type:PROTEIN  Length:99
                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeeeee.........hhhhhhhhhhhh.....eeeeeeee.....eeeeeeee..hhhhhhhhh.hhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                5jbh V    1 MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKEGE   99
                                    10        20        30        40        50        60        70        80        90         

Chain W from PDB  Type:PROTEIN  Length:63
                                                                                                
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee......eeeee......ee......eeee......ee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                5jbh W    1 MAKPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIVKAKILEVLE   63
                                    10        20        30        40        50        60   

Chain X from PDB  Type:PROTEIN  Length:71
                                                                                                        
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.........eeeeeeee........eeeeeee.......eeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                5jbh X    1 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRIGDILILRETEREAREIKSRR   71
                                    10        20        30        40        50        60        70 

Chain Y from PDB  Type:PROTEIN  Length:50
                                                                                   
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....ee...ee........eeee...eee.......ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                5jbh Y    1 MGQKWKLYEIKDGKVIRKNKFCPRCGPGVFMADHGDRWACGKCGYTEWKK   50
                                    10        20        30        40        50

Chain Z from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee......eeeeee.hhhhhh...hhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..eeeeeeee.......eeeeeeee.....hhhhhh..eeeeeeee....eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5jbh Z    1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPPG  186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JBH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JBH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JBH)

(-) Gene Ontology  (30, 213)

Asymmetric/Biological Unit(hide GO term definitions)

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  IF1A_PYRAB | Q9V138
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IF1A_PYRAB | Q9V1384mno 5jb3
        IF2A_SULSO | Q97Z792aho 2qmu 2qn6 3cw2 3qsy 3v11 5jb3
        IF2B_SULSO | Q97W592nxu 2qmu 2qn6 3cw2 3v11 5jb3 5k0y
        IF2G_SULSO | Q980A52aho 2plf 2pmd 2qmu 2qn6 3cw2 3i1f 3pen 3qsy 3sjz 3v11 4m0l 4m2l 4m4s 4m53 4nbs 4qfm 4qhy 4rcy 4rcz 4rd0 4rd1 4rd2 4rd3 4rd4 4rd6 4rjl 5dsz 5jb3
        RL41_PYRFU | Q8U2324v4n 4v6u 5jb3
        RL7A_PYRFU | Q8U1602hvy 3hax 3hay 3hjw 3lwo 3lwp 3lwq 3lwr 3lwv 3nmu 3nvi 3nvk 4by9 4v4n 4v6u 5jb3
        RS10_PYRFU | P618854v4n 4v6u 5jb3
        RS11_PYRAB | P620104cvn 4cw7 5jb3
        RS12_PYRAB | P619945jb3
        RS13_PYRFU | Q8U0E24v4n 4v6u 5jb3
        RS14Z_PYRFU | Q8U0134v4n 4v6u 5jb3
        RS15_PYRFU | Q8TZD94v4n 4v6u 5jb3
        RS17E_PYRFU | Q8U0U14v4n 4v6u 5jb3
        RS17_PYRFU | Q8U0084v4n 4v6u 5jb3
        RS19E_PYRAB | Q9V0G82v7f 5jb3
        RS19_PYRFU | Q8U0024v6u 5jb3
        RS24_PYRFU | Q8U4424v4n 4v6u 5jb3
        RS27A_PYRFU | Q8U4434v4n 4v6u 5jb3
        RS27_PYRFU | Q8U4744v4n 4v6u 5jb3
        RS28_PYRFU | Q8U1594v4n 4v6u 5jb3
        RS2_PYRFU | Q8U0F04v4n 4v6u 5jb3
        RS3A_PYRFU | Q8TZE14v6u 5jb3
        RS3_PYRFU | Q8U0044v6u 5jb3
        RS4E_PYRFU | Q8U0114v6u 5jb3
        RS4_PYRAB | P619925jb3
        RS5_PYRFU | Q8U0174v6u 5jb3
        RS6E_PYRFU | Q8U3H84v4n 4v6u 5jb3
        RS7_PYRFU | Q8U0M84v4n 4v6u 5jb3
        RS8E_PYRFU | Q8U1Y54v4n 4v6u 5jb3
        RS8_PYRFU | Q8U0144v6u 5jb3
        RS9_PYRFU | Q8U0E74v4n 4v6u 5jb3
        SUI1_METJA | Q579024mo0 5jb3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JBH)