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(-) Description

Title :  THE STRUCTURE OF AIF2GAMMA SUBUNIT H20F FROM ARCHAEON SULFOLOBUS SOLFATARICUS COMPLEXED WITH GDPCP
 
Authors :  O. V. Kravchenko, O. S. Nikonov, V. I. Arhipova, E. A. Stolboushkina, A. G. Gabdulkhakov, A. D. Nikulin, M. B. Garber, S. V. Nikonov
Date :  23 Oct 13  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym./Biol. Unit :  A
Keywords :  Translation Initiation, Rna-Binding, Gtp-Binding, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. V. Kravchenko, O. S. Nikonov, V. I. Arhipova, E. A. Stolboushkina, A. G. Gabdulkhakov, A. D. Nikulin, M. B. Garber, S. V. Nikonov
The Structure Of Aif2Gamma Subunit H20F From Archaeon Sulfolobus Solfataricus Complexed With Gdpcp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11D
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EIF2G, SSO0412
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: AIF2-GAMMA, EIF-2-GAMMA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric/Biological Unit (4, 19)
No.NameCountTypeFull Name
1FMT15Ligand/IonFORMIC ACID
2GCP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
3MG1Ligand/IonMAGNESIUM ION
4NA2Ligand/IonSODIUM ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:18 , ASP A:19 , PHE A:20 , GLY A:21 , LYS A:22 , THR A:23 , THR A:24 , MET A:45 , THR A:46 , GLY A:96 , ASN A:149 , LYS A:150 , ASP A:152 , VAL A:153 , SER A:184 , ALA A:185 , LEU A:186 , MG A:502 , HOH A:601 , HOH A:608 , HOH A:625 , HOH A:629 , HOH A:630 , HOH A:724 , HOH A:779 , HOH A:789 , HOH A:797 , HOH A:864BINDING SITE FOR RESIDUE GCP A 501
02AC2SOFTWARETHR A:23 , THR A:46 , GCP A:501 , HOH A:601 , HOH A:797BINDING SITE FOR RESIDUE MG A 502
03AC3SOFTWARELYS A:212 , GLN A:244 , TRP A:389 , SER A:390BINDING SITE FOR RESIDUE FMT A 503
04AC4SOFTWAREPHE A:221BINDING SITE FOR RESIDUE FMT A 504
05AC5SOFTWAREARG A:219 , ALA A:296 , HOH A:709BINDING SITE FOR RESIDUE FMT A 505
06AC6SOFTWARELEU A:312 , SER A:364 , THR A:365 , HOH A:640 , HOH A:660BINDING SITE FOR RESIDUE FMT A 506
07AC7SOFTWARETHR A:366 , LEU A:367 , ARG A:383 , ARG A:384BINDING SITE FOR RESIDUE FMT A 507
08AC8SOFTWAREARG A:43 , VAL A:99 , HOH A:691 , HOH A:713BINDING SITE FOR RESIDUE FMT A 508
09AC9SOFTWAREVAL A:223 , ARG A:280 , HOH A:674BINDING SITE FOR RESIDUE FMT A 509
10BC1SOFTWAREHOH A:857 , HOH A:893BINDING SITE FOR RESIDUE FMT A 510
11BC2SOFTWAREARG A:352 , LYS A:354BINDING SITE FOR RESIDUE FMT A 511
12BC3SOFTWARELYS A:347 , VAL A:348 , ASP A:349 , ARG A:399BINDING SITE FOR RESIDUE FMT A 512
13BC4SOFTWAREARG A:130 , FMT A:515 , HOH A:787BINDING SITE FOR RESIDUE FMT A 513
14BC5SOFTWARETRP A:33 , SER A:35 , GLU A:40 , GLY A:44 , MET A:45 , THR A:46 , HOH A:797BINDING SITE FOR RESIDUE FMT A 514
15BC6SOFTWAREARG A:130 , ASP A:250 , LYS A:275 , FMT A:513 , HOH A:842BINDING SITE FOR RESIDUE FMT A 515
16BC7SOFTWAREGLU A:252 , GLU A:344 , MET A:345BINDING SITE FOR RESIDUE FMT A 516
17BC8SOFTWARETHR A:103 , HOH A:857 , HOH A:885BINDING SITE FOR RESIDUE FMT A 517
18BC9SOFTWAREVAL A:151 , VAL A:154 , TRP A:327 , ASN A:328 , HOH A:605 , HOH A:616BINDING SITE FOR RESIDUE NA A 518
19CC1SOFTWARETHR A:54 , THR A:70 , HOH A:641 , HOH A:653 , HOH A:712 , HOH A:848BINDING SITE FOR RESIDUE NA A 519

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:59 -A:74
2A:62 -A:77

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Lys A:64 -Pro A:65
2Phe A:124 -Pro A:125
3Leu A:256 -Pro A:257

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NBS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NBS)

(-) Exons   (0, 0)

(no "Exon" information available for 4NBS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeee.....hhhhhhhhhhh.....hhhhhhhh.....eeeeeeeee.........ee....hhhhh.....eeeeeeeeee...hhhhhhhhhhhhh...eeeeeee......hhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh........eee.......hhhhhhhhhhhhh...........eeeeeeee...............eeeeeeee..ee...eeeeeeeeeeee..eeeeeeeeeeeeeeee..eee.ee.....eeeee..hhhhhhhhh....eeee......eeeeeeeeeee....................eeeeee..eeeeeeeeee...eeeeeeeeeee......eeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nbs A   2 AWPKVQPEVNIGVVGHVDFGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLVEI 415
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NBS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NBS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NBS)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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        IF2G_SULSO | Q980A5: 2aho 2plf 2pmd 2qmu 2qn6 3cw2 3i1f 3pen 3qsy 3sjz 3v11 4m0l 4m2l 4m4s 4m53 4qfm 4qhy 4rcy 4rcz 4rd0 4rd1 4rd2 4rd3 4rd4 4rd6 4rjl 5dsz 5jb3 5jbh

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