4CW7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF THE FAP7-RPS14 COMPLEX IN COMPLEX WITH ATP

Authors :   J. Loch, M. Blaud, S. Rety, S. Lebaron, P. Deschamps, J. Bareille, J. Jom J. Robert-Paganin, L. Delbos, F. Chardon, E. Zhang, C. Charenton, D. T N. Leulliot

Date :   01 Apr 14 (Deposition) - 28 May 14 (Release) - 28 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.46

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: G,H  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: C,D  (1x)

Keywords :   Transferase, Ribosome Biogenesis, Rnp Assembly (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Loch, M. Blaud, S. Rety, S. Lebaron, P. Deschamps, J. Bareille, J. Jombart, J. Robert-Paganin, L. Delbos, F. Chardon, E. Zhang, C. Charenton, D. Tollervey, N. Leulliot
Rna Mimicry By The Fap7 Adenylate Kinase In Ribosome Biogenesis
Plos Biol. V. 12 01860 2014
PubMed-ID: 24823650 | Reference-DOI: 10.1371/JOURNAL.PBIO.1001860

Molecule 1 - PUTATIVE ADENYLATE KINASE
	Chains	:	A, C, E, G
	EC Number	:	2.7.4.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PYROCOCCUS ABYSSI GE5
	Organism Taxid	:	272844
	Synonym	:	AK, ATP-AMP TRANSPHOSPHORYLASE, AFAP7

Molecule 2 - 30S RIBOSOMAL PROTEIN S11
	Chains	:	B, D, F, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PYROCOCCUS ABYSSI GE5
	Organism Taxid	:	272844
	Synonym	:	ARPS14

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:							G	H
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	8	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	-1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	-1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	-1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	-1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:9 , GLY A:10 , VAL A:11 , GLY A:12 , LYS A:13 , THR A:14 , THR A:15 , ARG A:96 , ARG A:100 , LYS A:138 , PRO A:140 , ILE A:143 , MG A:1002 , HOH A:2003 , HOH A:2004 , HOH A:2005 , HOH A:2018 , HOH A:2031 , GLU E:99	BINDING SITE FOR RESIDUE ATP A1001
02	AC2	SOFTWARE	THR A:14 , ATP A:1001 , HOH A:2003 , HOH A:2004 , HOH A:2005	BINDING SITE FOR RESIDUE MG A1002
03	AC3	SOFTWARE	ASP A:163 , GLU A:166 , HOH A:2026 , HOH A:2029 , HOH A:2030 , ASP B:51 , GLU B:54	BINDING SITE FOR RESIDUE MG A1003
04	AC4	SOFTWARE	GLY C:10 , VAL C:11 , GLY C:12 , LYS C:13 , THR C:14 , THR C:15 , ARG C:96 , ARG C:100 , LYS C:138 , PRO C:140 , ILE C:143 , MG C:1002 , HOH C:2002 , HOH C:2003	BINDING SITE FOR RESIDUE ADP C1001
05	AC5	SOFTWARE	THR C:14 , ADP C:1001 , HOH C:2002 , HOH C:2003	BINDING SITE FOR RESIDUE MG C1002
06	AC6	SOFTWARE	ASP C:163 , GLU C:166 , ASP D:51 , GLU D:54	BINDING SITE FOR RESIDUE MG C1003
07	AC7	SOFTWARE	HOH A:2015 , PRO E:9 , GLY E:10 , VAL E:11 , GLY E:12 , LYS E:13 , THR E:14 , THR E:15 , ARG E:96 , ARG E:100 , LYS E:138 , PRO E:140 , ILE E:143 , MG E:1002 , HOH E:2002 , HOH E:2003 , HOH E:2004 , HOH E:2005 , HOH E:2006	BINDING SITE FOR RESIDUE ATP E1001
08	AC8	SOFTWARE	THR E:14 , ATP E:1001 , HOH E:2004 , HOH E:2005 , HOH E:2006	BINDING SITE FOR RESIDUE MG E1002
09	AC9	SOFTWARE	ASP E:163 , GLU E:166 , HOH E:2031 , HOH E:2032 , HOH E:2035 , ASP F:51 , GLU F:54	BINDING SITE FOR RESIDUE MG E1003
10	BC1	SOFTWARE	GLY G:10 , VAL G:11 , GLY G:12 , LYS G:13 , THR G:14 , THR G:15 , ARG G:96 , ARG G:100 , LYS G:138 , PRO G:140 , ILE G:143 , MG G:1002 , HOH G:2004 , HOH G:2011	BINDING SITE FOR RESIDUE ADP G1001
11	BC2	SOFTWARE	THR G:14 , ADP G:1001 , HOH G:2003 , HOH G:2004 , HOH G:2011	BINDING SITE FOR RESIDUE MG G1002
12	BC3	SOFTWARE	ASP G:163 , GLU G:166 , HOH G:2018 , HOH G:2020 , ASP H:51 , GLU H:54	BINDING SITE FOR RESIDUE MG G1003

(no "SS Bond" information available for 4CW7)

Asymmetric Unit

No.	Residues
1	Asp A:45	-	Gly A:46
2	Ser A:153	-	Gly A:154
3	Gly D:87	-	Gly D:88
4	Asp E:45	-	Gly E:46
5	Ser E:153	-	Gly E:154
6	Lys F:129	-	Gly F:130
7	Arg F:133	-	Gly F:134
8	Asp G:45	-	Gly G:46
9	Lys G:64	-	Asp G:65
10	Ser G:153	-	Gly G:154

(no "SAP(SNP)/Variant" information available for 4CW7)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S11	PS00054	Ribosomal protein S11 signature.	RS11_PYRAB	102-124	4	B:102-124 D:102-124 F:102-124 H:102-124

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S11	PS00054	Ribosomal protein S11 signature.	RS11_PYRAB	102-124	1	- - - H:102-124

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S11	PS00054	Ribosomal protein S11 signature.	RS11_PYRAB	102-124	1	B:102-124 - - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S11	PS00054	Ribosomal protein S11 signature.	RS11_PYRAB	102-124	1	- - F:102-124 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RIBOSOMAL_S11	PS00054	Ribosomal protein S11 signature.	RS11_PYRAB	102-124	1	- D:102-124 - -

(no "Exon" information available for 4CW7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:181
 aligned with KAD6_PYRAB | Q9UZK4 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:181
                              1                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178 
           KAD6_PYRAB     - --MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....hhhhhhhhhhhhhh.eeeehhhhhhhh...eee..eee.hhhhhhhhhhhhh...eeeee..hhhhh...eeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 A  -1 MGMLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178

Chain B from PDB  Type:PROTEIN  Length:118
 aligned with RS11_PYRAB | P62010 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:118
                                    21        31        41        51        61        71        81        91       101       111       121        
           RS11_PYRAB    12 EKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPK 129
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....eeeeeee.....eeeeeehhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh.eeeeeeeee...........hhhhhhhhhhhhh..eeeeeee........ee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------RIBOSOMAL_S11          ----- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 B  12 EKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPK 129
                                    21        31        41        51        61        71        81        91       101       111       121

Chain C from PDB  Type:PROTEIN  Length:172
 aligned with KAD6_PYRAB | Q9UZK4 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:179
                             1                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169         
           KAD6_PYRAB     - -MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLG 178
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhh.eeeehhhhhhhh...-----..eehhhhhhhhhhhhhh..eeeee..hhhhh...eeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh--.......hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 C   0 GMLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCG-----EVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKS--KRRVGIVDWSEVYDEIIPYLRLG 178
                                     9        19        29        39 |     |49        59        69        79        89        99       109       119       129       139       149   |  |159       169         
                                                                    41    47                                                                                                       153  |                      
                                                                                                                                                                                      156

Chain D from PDB  Type:PROTEIN  Length:120
 aligned with RS11_PYRAB | P62010 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:120
                                    22        32        42        52        62        72        82        92       102       112       122       132
           RS11_PYRAB    13 KWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGR 132
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee....eeeeeee.....eeeeeehhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeee...........hhhhhhhhhhhhh..eeeeeee.........ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------RIBOSOMAL_S11          -------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cw7 D  13 KWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGR 132
                                    22        32        42        52        62        72        82        92       102       112       122       132

Chain E from PDB  Type:PROTEIN  Length:180
 aligned with KAD6_PYRAB | Q9UZK4 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:181
                              1                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178 
           KAD6_PYRAB     - --MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhhhh.eeeehhhhhhhh.....-......hhhhhhhhhhhhhh...eeee..hhhhh...eeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 E  -1 MGMLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGRE-DGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
                                     8        18        28        38    | | 48        58        68        78        88        98       108       118       128       138       148       158       168       178 
                                                                       43 |                                                                                                                                      
                                                                         45

Chain F from PDB  Type:PROTEIN  Length:118
 aligned with RS11_PYRAB | P62010 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:125
                                    21        31        41        51        61        71        81        91       101       111       121       131     
           RS11_PYRAB    12 EKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRR 136
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeeee.....eeeeeehhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeee....-------hhhhhhhhhhhhh..eeeeeee............hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------RIBOSOMAL_S11          ------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 F  12 EKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGG-------PGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRR 136
                                    21        31        41        51        61        71        81      |  -    |  101       111       121       131     
                                                                                                       88      96

Chain G from PDB  Type:PROTEIN  Length:180
 aligned with KAD6_PYRAB | Q9UZK4 from UniProtKB/Swiss-Prot  Length:180

    Alignment length:180
                             1                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179
           KAD6_PYRAB     - -MLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhh.eeeehhhhhhhh...eee..eee.hhhhhhhhhhhhh...eeeee..hhhhh...eeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cw7 G   0 GMLIAITGTPGVGKTTIAKLLAEKLGYEYVNLRDFALEKGCGREVDGEVEVEIDELAYFVEKELKDRNVVLDGHLSHLMPVDLVVVLRAHPRIIGERLRERGYSKEKIGENVEAELVDAILIEAIDEHENVIEVDTTNKTPEEIVEEIIGLIKSGVKRRVGIVDWSEVYDEIIPYLRLGG 179
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179

Chain H from PDB  Type:PROTEIN  Length:122
 aligned with RS11_PYRAB | P62010 from UniProtKB/Swiss-Prot  Length:137

    Alignment length:122
                                    17        27        37        47        57        67        77        87        97       107       117       127  
           RS11_PYRAB     8 IKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPK 129
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee....eeeeeee.....eeeeeehhhhh.hhhhh.hhhhhhhhhhhhhhhhhhh...eeeeeee...........hhhhhhhhhhhhh..eeeeeee........ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------RIBOSOMAL_S11          ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cw7 H   8 IKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPK 129
                                    17        27        37        47        57        67        77        87        97       107       117       127

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CW7)

(no "CATH Domain" information available for 4CW7)

(no "Pfam Domain" information available for 4CW7)

Asymmetric Unit(hide GO term definitions)

Chain A,C,E,G (KAD6_PYRAB | Q9UZK4)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004017	adenylate kinase activity	Catalysis of the reaction: ATP + AMP = 2 ADP.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0046939	nucleotide phosphorylation	The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

Chain B,D,F,H (RS11_PYRAB | P62010)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0019843	rRNA binding	Interacting selectively and non-covalently with ribosomal RNA.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		ATP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Arg F:133 - Gly F:134	[ RasMol ]
		Asp A:45 - Gly A:46	[ RasMol ]
		Asp E:45 - Gly E:46	[ RasMol ]
		Asp G:45 - Gly G:46	[ RasMol ]
		Gly D:87 - Gly D:88	[ RasMol ]
		Lys F:129 - Gly F:130	[ RasMol ]
		Lys G:64 - Asp G:65	[ RasMol ]
		Ser A:153 - Gly A:154	[ RasMol ]
		Ser E:153 - Gly E:154	[ RasMol ]
		Ser G:153 - Gly G:154	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
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Access by PDB/NDB ID
	4cw7
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		Orientation in Membranes	:	OPM
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		Structural Genomics	:	GeneCensus
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	KAD6_PYRAB \| Q9UZK4
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	RS11_PYRAB \| P62010
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	2.7.4.3
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Access by UniProt ID/Accession number
	KAD6_PYRAB \| Q9UZK4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RS11_PYRAB \| P62010
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	KAD6_PYRAB \| Q9UZK4	:	4cvn
	RS11_PYRAB \| P62010	:	4cvn 5jb3 5jbh

4cvn	STRUCTURE OF THE FAP7-RPS14 COMPLEX

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File