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(-) Description

Title :  CRYSTAL STRUCTURE OF TL11-113 BOUND TO TAK1-TAB1
 
Authors :  D. Gurbani, K. D. Westover
Date :  07 Apr 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Mitogen-Activated Protein Kinase Kinase Kinase 7/Tgf-Beta-Activated Kinase 1 And Map3K7-Binding Protein 1, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Tan, D. Gurbani, E. L. Weisberg, J. C. Hunter, L. Li, D. S. Jones, S. B. Ficarro, S. Mowafy, C. P. Tam, S. Rao, G. Du, J. D. Griffin, P. K. Sorger, J. A. Marto, K. D. Westover, N. S. Gray
Structure-Guided Development Of Covalent Tak1 Inhibitors.
Bioorg. Med. Chem. V. 25 838 2017
PubMed-ID: 28011204  |  Reference-DOI: 10.1016/J.BMC.2016.11.035

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7/TGF-BETA- ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1 CHIMERA
    Chains: A
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP O43318 RESIDUES 31-303, Q15750 RESIDUES 468-504
    Gene: MAP3K7, TAK1, TAB1, MAP3K7IP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSFORMING GROWTH FACTOR-BETA-ACTIVATED KINASE 1,TGF-BETA- ACTIVATED KINASE 1,MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7- INTERACTING PROTEIN 1,TGF-BETA-ACTIVATED KINASE 1-BINDING PROTEIN 1, TAK1-BINDING PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
16H41Ligand/IonN-{2-[(5-CHLORO-2-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)OXY]PHENYL}PROP-2-ENAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:42 , VAL A:50 , ALA A:61 , MET A:104 , GLU A:105 , TYR A:106 , ALA A:107 , ASN A:161 , LEU A:163 , CYS A:174 , ASP A:175binding site for residue 6H4 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J8I)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asn A:98 -Pro A:99
2Glu A:120 -Pro A:121
3Gln A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J8I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J8I)

(-) Exons   (0, 0)

(no "Exon" information available for 5J8I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:288
                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eee...eeeeee....eeeeee..hhhhhhhhhhhhhhhhhh.......eee.......eee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...........hhh.eeee....eeee..hhhhhh...........hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh....ee...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.................hhh.ee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5j8i A  27 SLHMIDYKEIEVEEVVGRFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGCLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSLPPGEDGRVEPYVDFAEFYRLWSVDHG 496
                                    36       |48        58        68        78        88     || 99       109       119       129       139       149       159       169     ||194       204       214       224       234       244       254       264       274       284       294       468       478       488        
                                            44|                                             94|                                                                            175|                                                                                                             303|                            
                                             47                                              96                                                                             191                                                                                                              468
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J8I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J8I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J8I)

(-) Gene Ontology  (59, 72)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K7_HUMAN | O43318: 2eva 2yiy 4gs6 4l3p 4l52 4l53 4o91 5e7r 5gjd 5gjf 5gjg 5j7s 5j9l 5jga 5jgb 5jgd 5jh6 5jk3
        TAB1_HUMAN | Q15750: 2j4o 2pom 2pop 2yds 2yiy 4ay5 4ay6 4gs6 4ka3 4l3p 4l52 4l53 4o91 5diy 5e7r 5gjd 5gjf 5gjg 5j7s 5j9l 5jga 5jgb 5jgd 5jh6 5jk3

(-) Related Entries Specified in the PDB File

5j7s