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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TAK1/TAB1 FUSION PROTEIN IN COMPLEX WITH LIGAND 2
 
Authors :  M. Irie, M. Nakamura, T. A. Fukami, T. Matsuura, K. Morishima
Date :  29 Jun 16  (Deposition) - 16 Nov 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase-Transferase Inhibitor Complex, Tak1-Tab1 Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Muraoka, M. Ide, M. Irie, K. Morikami, T. Miura, M. Nishihara, H. Kashiwagi
Development Of A Method For Converting A Tak1 Type I Inhibitor Into A Type Ii Or C-Helix-Out Inhibitor By Structure-Based Drug Design (Sbdd)
Chem. Pharm. Bull. V. 64 1622 2016
PubMed-ID: 27803473  |  Reference-DOI: 10.1248/CPB.C16-00606

(-) Compounds

Molecule 1 - TAK1 KINASE - TAB1 CHIMERA FUSION PROTEIN
    Chains: A
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 31-303,UNP RESIDUES 468-504
    Gene: MAP3K7, TAK1, TAB1, MAP3K7IP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: FUSION OF MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7,TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
16V31Ligand/Ion1-(4-((1H-PYRROLO[2,3-B]PYRIDIN-4-YL)OXY)PHENYL)-3-(5-(4-METHYLPIPERAZIN-1-YL)NAPHTHALEN-2-YL)UREA

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:42 , VAL A:50 , ALA A:61 , LYS A:63 , GLU A:77 , GLN A:80 , LEU A:81 , VAL A:90 , MET A:104 , GLU A:105 , TYR A:106 , ALA A:107 , ILE A:153 , HIS A:154 , CYS A:174 , ASP A:175 , PHE A:176binding site for residue 6V3 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GJD)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asn A:98 -Pro A:99
2Glu A:120 -Pro A:121
3Gln A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GJD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GJD)

(-) Exons   (0, 0)

(no "Exon" information available for 5GJD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......eeeee.......eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhh.......eeeee....eeeee.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...........hhh.eeee....eeee.......hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh........................hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gjd A  26 GPLHMIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSLPGRVEPYVDFAEFYRLWSVDH 495
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    || 195       205       215       225       235       245       255       265       275       285       295       469 ||    483       493  
                                                                                                                                                                                    180|                                                                                                             303|  ||                   
                                                                                                                                                                                     191                                                                                                              468  ||                   
                                                                                                                                                                                                                                                                                                         471|                   
                                                                                                                                                                                                                                                                                                          476
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GJD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GJD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GJD)

(-) Gene Ontology  (59, 72)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K7_HUMAN | O43318: 2eva 2yiy 4gs6 4l3p 4l52 4l53 4o91 5e7r 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3
        TAB1_HUMAN | Q15750: 2j4o 2pom 2pop 2yds 2yiy 4ay5 4ay6 4gs6 4ka3 4l3p 4l52 4l53 4o91 5diy 5e7r 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3

(-) Related Entries Specified in the PDB File

5gjf 5gjg