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(-) Description

Title :  IRREVERSIBLE INHIBITION OF TAK1 KINASE BY 5Z-7-OXOZEAENOL
 
Authors :  N. A. Larsen, A. D. Ferguson, J. Wu
Date :  27 Aug 12  (Deposition) - 23 Jan 13  (Release) - 27 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Fold, Tab1 Binding, Cytosol, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wu, F. Powell, N. A. Larsen, Z. Lai, K. F. Byth, J. Read, R. F. Gu, M. Roth, D. Toader, J. C. Saeh, H. Chen
Mechanism And In Vitro Pharmacology Of Tak1 Inhibition By (5Z)-7-Oxozeaenol.
Acs Chem. Biol. V. 8 643 2013
PubMed-ID: 23272696  |  Reference-DOI: 10.1021/CB3005897

(-) Compounds

Molecule 1 - TAK1-TAB1 FUSION PROTEIN
    Chains: A
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: MAP3K7, TAK1, TAB1, MAP3K7IP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSFORMING GROWTH FACTOR-BETA-ACTIVATED KINASE 1, TGF- BETA-ACTIVATED KINASE 1, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 1, TGF-BETA-ACTIVATED KINASE 1-BINDING PROTEIN 1, TAK1-BINDING PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
11FM1Ligand/Ion(3S,5Z,8S,9S,11E)-8,9,16-TRIHYDROXY-14-METHOXY-3-METHYL-3,4,9,10-TETRAHYDRO-1H-2-BENZOXACYCLOTETRADECINE-1,7(8H)-DIONE
2EDO10Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:300 , PRO A:301 , HIS A:495 , HOH A:855BINDING SITE FOR RESIDUE EDO A 601
02AC2SOFTWAREPRO A:258 , TYR A:488 , TRP A:491 , HOH A:718 , HOH A:852BINDING SITE FOR RESIDUE EDO A 602
03AC3SOFTWAREASP A:295 , HOH A:821BINDING SITE FOR RESIDUE EDO A 603
04AC4SOFTWARESER A:272 , ARG A:274 , PRO A:292 , GLU A:486 , HOH A:797 , HOH A:799 , HOH A:800BINDING SITE FOR RESIDUE EDO A 604
05AC5SOFTWAREALA A:194 , LYS A:227 , PRO A:228 , HOH A:722BINDING SITE FOR RESIDUE EDO A 605
06AC6SOFTWARESER A:276 , ASP A:483 , GLU A:486 , HOH A:701 , HOH A:737BINDING SITE FOR RESIDUE EDO A 606
07AC7SOFTWAREARG A:248 , TRP A:267 , LYS A:269 , HOH A:761 , HOH A:762 , HOH A:859BINDING SITE FOR RESIDUE EDO A 607
08AC8SOFTWAREPRO A:297 , LEU A:298BINDING SITE FOR RESIDUE EDO A 608
09AC9SOFTWAREGLY A:109 , GLY A:167 , GLY A:168 , HOH A:720 , HOH A:854 , HOH A:855BINDING SITE FOR RESIDUE EDO A 609
10BC1SOFTWARELYS A:282 , HIS A:468 , PRO A:480 , VAL A:482 , ASP A:483BINDING SITE FOR RESIDUE EDO A 610
11BC2SOFTWAREVAL A:42 , ARG A:44 , GLY A:45 , ALA A:61 , MET A:104 , GLU A:105 , TYR A:106 , ALA A:107 , PRO A:160 , ASN A:161 , LEU A:163 , CYS A:174 , ASP A:175 , HOH A:840 , HOH A:849BINDING SITE FOR RESIDUE 1FM A 611

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GS6)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn A:98 -Pro A:99
2Glu A:120 -Pro A:121
3Gln A:148 -Pro A:149
4Gly A:234 -Pro A:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GS6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GS6)

(-) Exons   (0, 0)

(no "Exon" information available for 4GS6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.hhh.eeeeeeee.....eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhh.......eeeee....eeeee.....hhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhh...........hhh.eeee....eeee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.....ee...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh.........ee..........ee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gs6 A  26 GSLHMIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSLPPGEDGRVEPYVDFAEFYRLWSVDHG 496
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175 ||    198       208       218       228       238       248       258       268       278       288       298    || 472       482       492    
                                                                                                                                                                                 177|                                                                                                             303|                            
                                                                                                                                                                                  191                                                                                                              468
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GS6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GS6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GS6)

(-) Gene Ontology  (59, 72)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K7_HUMAN | O43318: 2eva 2yiy 4l3p 4l52 4l53 4o91 5e7r 5gjd 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3
        TAB1_HUMAN | Q15750: 2j4o 2pom 2pop 2yds 2yiy 4ay5 4ay6 4ka3 4l3p 4l52 4l53 4o91 5diy 5e7r 5gjd 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3

(-) Related Entries Specified in the PDB File

2eva STRUCTURAL BASIS FOR THE INTERACTION OF TAK1 KINASE WITH ITS ACTIVATING PROTEIN TAB1