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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE II INHIBITOR NG25 BOUND TO TAK1-TAB1
 
Authors :  D. Gurbani, J. C. Hunter, L. Tan, K. D. Westover
Date :  31 Dec 13  (Deposition) - 30 Jul 14  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Mitogen-Activated Protein Kinase Kinase Kinase 7, Tgf-Beta-Activated Kinase 1 And Map3K7-Binding Protein 1 Chimera, Serine/Threonine Kinase Which Acts As An Essential Component Of The Map Kinase Signal Transduction Pathway, Tgf-Beta-Activated Kinase 1 And Map3K7-Binding Protein 1, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Tan, T. Nomanbhoy, D. Gurbani, M. Patricelli, J. Hunter, J. Geng, L. Herhaus, J. Zhang, E. Pauls, Y. Ham, H. G. Choi, T. Xie, X. Deng, S. J. Buhrlage, T. Sim, P. Cohen, G. Sapkota, K. D. Westover, N. S. Gray
Discovery Of Type Ii Inhibitors Of Tgf Beta-Activated Kinas 1 (Tak1) And Mitogen-Activated Protein Kinase Kinase Kinase Kinase 2 (Map4K2).
J. Med. Chem. V. 58 183 2015
PubMed-ID: 25075558  |  Reference-DOI: 10.1021/JM500480K

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7/TGF-BETA- ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1 CHIMERA
    Chains: A
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE
    Expression System Common: CABBAGE LOOPER
    Expression System Strain: HIGH FIVE CELLS (BTI-TN-5B1-4) CLONAL ISOLATE DERIVED FROM THE PARENTAL TRICHOPULSIA NI CELL LINE (CABBAGE LOOPER OVARY)
    Expression System Taxid: 7111
    Expression System Vector: BACULOVIRUS
    Fragment: KINASE DOMAIN OF TAK1 (UNP O43318 RESIDUES 31-303) AND RESIDUES 468-504 OF TAB1 (UNP Q15750)
    Gene: MAP3K7, MAP3K7 TAK1 TAB1 MAP3K7IP1, TAK1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NG21Ligand/IonN-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}-4-METHYL-3-(1H-PYRROLO[2,3-B]PYRIDIN-4-YLOXY)BENZAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1NG21Ligand/IonN-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}-4-METHYL-3-(1H-PYRROLO[2,3-B]PYRIDIN-4-YLOXY)BENZAMIDE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1NG24Ligand/IonN-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}-4-METHYL-3-(1H-PYRROLO[2,3-B]PYRIDIN-4-YLOXY)BENZAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:77 , GLN A:80 , LEU A:81 , ILE A:89 , VAL A:90 , MET A:104 , GLU A:105 , ALA A:107 , LEU A:144 , ILE A:153 , HIS A:154 , LEU A:163 , ILE A:173 , CYS A:174 , ASP A:175 , PHE A:176BINDING SITE FOR RESIDUE NG2 A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O91)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asn A:98 -Pro A:99
2Glu A:120 -Pro A:121
3Gln A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O91)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O91)

(-) Exons   (0, 0)

(no "Exon" information available for 4O91)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhh.eeeeeeee.....eeeeeee..eeeeeee..hhhhhhhhhhhhhhhhhh.......eeeee....eeeee.....hhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhhh..........hhh.eeee....eeee.....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh.....ee...hhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhh.........ee..........ee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o91 A  27 SLHMIDYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEPLQYPCQHSLPPGEDGRVEPYVDFAEFYRLWSVDHG 496
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176||     199       209       219       229       239       249       259       269       279       289       299   ||  473       483       493   
                                                                                                                                                                                177|                                                                                                             303|                            
                                                                                                                                                                                 191                                                                                                              468
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O91)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O91)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O91)

(-) Gene Ontology  (59, 72)

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  4o91
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  M3K7_HUMAN | O43318
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  TAB1_HUMAN | Q15750
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  2.7.11.25
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K7_HUMAN | O43318: 2eva 2yiy 4gs6 4l3p 4l52 4l53 5e7r 5gjd 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3
        TAB1_HUMAN | Q15750: 2j4o 2pom 2pop 2yds 2yiy 4ay5 4ay6 4gs6 4ka3 4l3p 4l52 4l53 5diy 5e7r 5gjd 5gjf 5gjg 5j7s 5j8i 5j9l 5jga 5jgb 5jgd 5jh6 5jk3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4O91)