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(-) Description

Title :  IDENTIFICATION OF SPIROOXINDOLE AND DIBENZOXAZEPINE MOTIFS AS POTENT MINERALOCORTICOID RECEPTOR ANTAGONISTS
 
Authors :  G. Chen, B. M. Mckeever
Date :  04 Jan 16  (Deposition) - 09 Mar 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Mineralocorticoid Receptor, Ligand-Binding Domain, Mr-Lbd, Antagonists, Co-Crystal, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. D. Lotesta, A. P. Marcus, Y. Zheng, K. Leftheris, P. B. Noto, S. Meng, G. Kandpal, G. Chen, J. Zhou, B. Mckeever, Y. Bukhtiyarov, Y. Zhao, D. S. Lala, S. B. Singh, G. M. Mcgeehan
Identification Of Spirooxindole And Dibenzoxazepine Motifs As Potent Mineralocorticoid Receptor Antagonists.
Bioorg. Med. Chem. V. 24 1384 2016
PubMed-ID: 26897089  |  Reference-DOI: 10.1016/J.BMC.2016.02.014

(-) Compounds

Molecule 1 - MINERALOCORTICOID RECEPTOR
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL_C5X
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LIGAND-BINDING DOMAIN (UNP RESIDUES 732-984)
    Gene: NR3C2, MCR, MLR
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MR,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 2

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
160R3Ligand/Ion6-[(~{E})-(3-FLUORANYL-6~{H}-BENZO[C][1]BENZOXEPIN-11-YLIDENE)METHYL]-4~{H}-1,4-BENZOXAZIN-3-ONE
2CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
160R1Ligand/Ion6-[(~{E})-(3-FLUORANYL-6~{H}-BENZO[C][1]BENZOXEPIN-11-YLIDENE)METHYL]-4~{H}-1,4-BENZOXAZIN-3-ONE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
160R1Ligand/Ion6-[(~{E})-(3-FLUORANYL-6~{H}-BENZO[C][1]BENZOXEPIN-11-YLIDENE)METHYL]-4~{H}-1,4-BENZOXAZIN-3-ONE
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
160R1Ligand/Ion6-[(~{E})-(3-FLUORANYL-6~{H}-BENZO[C][1]BENZOXEPIN-11-YLIDENE)METHYL]-4~{H}-1,4-BENZOXAZIN-3-ONE
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:769 , ASN A:770 , GLN A:776 , MET A:807 , SER A:810 , SER A:811 , LEU A:814 , ARG A:817 , LEU A:938 , PHE A:941 , CYS A:942 , THR A:945 , VAL A:954 , PHE A:956binding site for residue 60R A 1001
2AC2SOFTWARELEU B:769 , ASN B:770 , GLN B:776 , MET B:807 , SER B:810 , SER B:811 , LEU B:814 , ARG B:817 , PHE B:829 , MET B:845 , LEU B:938 , PHE B:941 , CYS B:942 , THR B:945binding site for residue 60R B 1001
3AC3SOFTWAREARG B:817binding site for residue CL B 1002
4AC4SOFTWARELEU C:769 , ASN C:770 , LEU C:772 , GLN C:776 , MET C:807 , SER C:810 , SER C:811 , LEU C:814 , ARG C:817 , MET C:845 , LEU C:938 , PHE C:941 , CYS C:942 , THR C:945 , PHE C:956binding site for residue 60R C 1001

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:740 -A:959

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HCV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HCV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HCV)

(-) Exons   (0, 0)

(no "Exon" information available for 5HCV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.eee.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcv A 738 PVMVLENIEPEIVYAGYPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQLPKVESGNAKPLYFH 982
                                   747      |761       771       781       791       801       811       821       831       841       851       861       871       881       891       901     ||916       926       936       946       956       966       976      
                                          754|                                                                                                                                                 907|                                                                     
                                           759                                                                                                                                                  913                                                                     


Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcv B 738 PVMVLENIEPEIVYAGYPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQLPKVESGNAKPLYFH 982
                                   747      |761       771       781       791       801       811       821       831       841       851       861       871       881       891       901     ||920       930       940       950       960       970       980  
                                          754|                                                                                                                                                 907|                                                                 
                                           759                                                                                                                                                  917                                                                 


Chain C from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeehhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcv C 738 PVMVLENIEPEIVYAGYPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQLPKVNAKPLYFH 982
                                   747      |761       771       781       791       801       811       821       831       841       851       861       871       881       891       901     ||920       930       940       950       960       970||       
                                          754|                                                                                                                                                 907|                                                   971|       
                                           759                                                                                                                                                  917                                                    975
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HCV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HCV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HCV)

(-) Gene Ontology  (21, 21)

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  5hcv
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        MCR_HUMAN | P08235: 1y9r 1ya3 2a3i 2aa2 2aa5 2aa6 2aa7 2aax 2ab2 2abi 2oax 3vhu 3vhv 3wff 3wfg 4pf3 4tnt 4uda 4udb 5l7e 5l7g 5l7h

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