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(-) Description

Title :  GALECTIN-8 N-TERMINAL DOMAIN CARBOHYDRATE RECOGNITION DOMAIN
 
Authors :  J. Y. Su, Y. L. Si
Date :  28 Sep 16  (Deposition) - 21 Dec 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Galectin-8 N-Terminal Domain Carbohydrate Recognition Domain, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. L. Si, Y. Wang, J. Gao, C. Song, S. Feng, Y. Zhou, G. Tai, J. Y. Su
Crystallization Of Galectin-8 Linker Reveals Intricate Relationship Between The N-Terminal Tail And The Linker
Int J Mol Sci V. 17 2088 2016
PubMed: search  |  Reference-DOI: 10.3390/IJMS17122088

(-) Compounds

Molecule 1 - GALECTIN-8
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 7-154)
    GeneLGALS8
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGAL-8,PO66 CARBOHYDRATE-BINDING PROTEIN,PO66-CBP,PROSTATE CARCINOMA TUMOR ANTIGEN 1,PCTA-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1LAT1Ligand/IonBETA-LACTOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:52 , HIS A:72 , ASN A:74 , ARG A:76 , ASN A:86 , GLU A:96 , HOH A:359 , HOH A:390binding site for residue LAT A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GZD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:24 -Pro A:25
2Lys A:64 -Pro A:65

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GZD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GZD)

(-) Exons   (0, 0)

(no "Exon" information available for 5GZD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeee.........eeeeeee.......eeeeeee........eeeeeeeee.....eeeeeeee..ee...eee.........eeeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gzd A  14 NLQNIIYNPVIPFVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFS 161
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GZD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GZD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GZD)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LEG8_HUMAN | O002142yro 2yv8 2yxs 3ap4 3ap5 3ap6 3ap7 3ap9 3apb 3ojb 3vkl 3vkm 3vkn 3vko 4bmb 4bme 4fqz 4gxl 4han 5gzc 5gze 5gzf 5gzg 5t7i 5t7s 5t7t 5t7u

(-) Related Entries Specified in the PDB File

5gzc 5gze 5gzf 5gzg