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(-) Description

Title :  STRUCTURE OF E.COLI FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE BOUND TO TRIS
 
Authors :  T. H. Tran, K. H. Huynh, T. H. Ho, L. W. Kang
Date :  03 Jul 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fba Tris Bound, Lyase Aldolase Ec 4. 1. 2. 13 Fructose 1, 6-Bisphosphate Glycolysis Anabolic Pathways Catabolic Pathways, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. H. Tran, K. H. Huynh, T. H. Ho, L. W. Kang
Structure Of E. Coli Fructose 1, 6-Bisphosphate Aldolase, Tri Bound Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 2
    Chains: A, B
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: FBAA, FBA, FDA, B2925, JW2892
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE,FRUCTOSE- BISPHOSPHATE ALDOLASE CLASS II

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
4ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:18 , PRO A:214 , SER A:258 , LEU A:259 , HOH A:518 , HOH A:528 , HOH A:543binding site for residue GOL A 401
2AC2SOFTWAREHIS A:110 , HIS A:264 , GLY A:265 , ZN A:404 , HOH A:501 , HOH A:502 , HOH A:504 , HOH A:508 , HOH A:509binding site for residue TRS A 402
3AC3SOFTWARESER A:88 , HIS A:91 , HIS A:92 , GLN A:95 , SER B:88 , HIS B:91 , HIS B:92 , GLN B:95binding site for residue PEG A 403
4AC4SOFTWAREHIS A:110 , HIS A:264 , TRS A:402 , HOH A:508binding site for residue ZN A 404
5AC5SOFTWAREHIS B:110 , HIS B:264 , GLY B:265 , ZN B:402 , HOH B:503 , HOH B:529 , HOH B:536binding site for residue TRS B 401
6AC6SOFTWAREHIS B:110 , HIS B:264 , TRS B:401 , HOH B:529binding site for residue ZN B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GK7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GK7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GK7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GK7)

(-) Exons   (0, 0)

(no "Exon" information available for 5GK7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.....eee......hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhh.......eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhh...eee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gk7 A   1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTLYTQPEDVDYAYTELSKISPRFTIAASFGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       196       206       216       235       245       255       265       275       285       295       305       315       325       335       345       355   
                                                                                                                                                                                                           178|                          224|                                                                                                                            
                                                                                                                                                                                                            195                           234                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhh.......eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhh...eee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gk7 B   1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCLYTQPEDVDYAYTELSKISPRFTIAASFGNVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      |197       207       217      |237       247       257       267       277       287       297       307       317       327       337       347       357 
                                                                                                                                                                                                          177|                          224|                                                                                                                           
                                                                                                                                                                                                           195                           235
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GK7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GK7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GK7)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALF_ECOLI | P0AB71: 1b57 1dos 1gyn 1zen 5gk3 5gk4 5gk5 5gk6 5gk8

(-) Related Entries Specified in the PDB File

5gk3 5gk4 5gk5 5gk6 5gk8