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(-) Description

Title :  STRUCTURE OF E.COLI FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE, ACETATE BOUND FORM
 
Authors :  T. H. Tran, K. H. Huynh, T. H. Ho, L. W. Kang
Date :  03 Jul 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fba Acetate Bound, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. H. Tran, K. H. Huynh, T. H. Ho, L. W. Kang
Structure Of E. Coli Fructose 1, 6-Bisphosphate Aldolase, Acetate Bound Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 2
    Chains: A, B
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: FBAA, FBA, FDA, B2925, JW2892
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: FBPA,FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE,FRUCTOSE- BISPHOSPHATE ALDOLASE CLASS II

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4ZN4Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:18 , TYR A:206 , PRO A:214 , SER A:258 , LEU A:259 , HOH A:523 , HOH A:571 , HOH A:572 , HOH A:577binding site for residue GOL A 401
02AC2SOFTWAREHIS A:91 , ALA A:125 , HIS A:129binding site for residue GOL A 402
03AC3SOFTWARELEU A:145 , SER A:146 , GLU A:148 , LEU A:150 , ASN A:153 , GLY A:176 , CYS A:177binding site for residue GOL A 403
04AC4SOFTWARESER A:267 , ASN A:286 , ASP A:288 , THR A:289binding site for residue ACT A 404
05AC5SOFTWAREHIS A:110 , GLU A:174 , HIS A:226 , HIS A:264 , HOH A:509binding site for residue ZN A 405
06AC6SOFTWAREHIS A:110 , HIS A:226 , HIS A:264 , HOH A:521 , HOH A:645 , HOH A:655binding site for residue ZN A 406
07AC7SOFTWAREGLN B:18 , TYR B:206 , PRO B:214 , SER B:258 , LEU B:259 , ASN B:260 , HOH B:549 , HOH B:553 , HOH B:556binding site for residue GOL B 401
08AC8SOFTWARESER A:88 , HIS A:91 , HIS A:92 , SER B:88 , HIS B:91 , HIS B:92 , GLN B:95binding site for residue PEG B 402
09AC9SOFTWARESER B:267 , ASN B:286 , ASP B:288 , THR B:289 , HOH B:535binding site for residue ACT B 403
10AD1SOFTWAREHIS B:110 , GLU B:174 , HIS B:226 , HIS B:264 , ZN B:405 , HOH B:543binding site for residue ZN B 404
11AD2SOFTWAREHIS B:110 , HIS B:226 , HIS B:264 , ZN B:404 , HOH B:531 , HOH B:640 , HOH B:658binding site for residue ZN B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GK8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GK8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GK8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GK8)

(-) Exons   (0, 0)

(no "Exon" information available for 5GK8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhh.......eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhh...eee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gk8 A   1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCYTQPEDVDYAYTELSKISPRFTIAASFGNVHVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      |198       208       218       236       246       256       266       276       286       296       306       316       326       336       346       356  
                                                                                                                                                                                                          177|                           226|                                                                                                                           
                                                                                                                                                                                                           196                            235                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...ee..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhh.......eee......hhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhh...eee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gk8 B   1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGYTQPEDVDYAYTELSKISPRFTIAASFGNVHVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170     ||199       209       219      |237       247       257       267       277       287       297       307       317       327       337       347       357 
                                                                                                                                                                                                         176|                           226|                                                                                                                           
                                                                                                                                                                                                          196                            235
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GK8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GK8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GK8)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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UniProtKB/Swiss-Prot
        ALF_ECOLI | P0AB71: 1b57 1dos 1gyn 1zen 5gk3 5gk4 5gk5 5gk6 5gk7

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