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(-) Description

Title :  STRUCTURE OF THE MAMMALIAN VOLTAGE-GATED CALCIUM CHANNEL CAV1.1 COMPLEX AT NEAR ATOMIC RESOLUTION
 
Authors :  J. P. Wu, Z. Yan, Z. Q. Li, Q. Zhou, N. Yan
Date :  02 Jul 16  (Deposition) - 14 Sep 16  (Release) - 21 Sep 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.60
Chains :  Asym./Biol. Unit :  A,B,C,E,F
Keywords :  Complex, Channel, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Wu, Z. Yan, Z. Q. Li, X. Y. Qian, S. Lu, M. Q. Dong, Q. Zhou, N. Yan
Structure Of The Voltage-Gated Calcium Channel Cav1. 1 At 3. Angstrom Resolution
Nature V. 537 191 2016
PubMed-ID: 27580036  |  Reference-DOI: 10.1038/NATURE19321

(-) Compounds

Molecule 1 - VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1S
    Chains: A
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: CALCIUM CHANNEL,L TYPE,ALPHA-1 POLYPEPTIDE,ISOFORM 3, SKELETAL MUSCLE,VOLTAGE-GATED CALCIUM CHANNEL SUBUNIT ALPHA CAV1.1
 
Molecule 2 - VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT BETA-1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 80-174
    Gene: CACNB1, CACNLB1
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Other Details: THIS DOMAIN WAS DOCKED BY A CRYSTAL STRUCTURE (4DEY)
    Synonym: CAB1,CALCIUM CHANNEL VOLTAGE-DEPENDENT SUBUNIT BETA 1
 
Molecule 3 - VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT BETA-1
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T-2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 265-463
    Gene: CACNB1, CACNLB1
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Other Details: THIS DOMAIN WAS DOCKED BY A CRYSTAL STRUCTURE (4DEY)
    Synonym: CAB1,CALCIUM CHANNEL VOLTAGE-DEPENDENT SUBUNIT BETA 1
 
Molecule 4 - VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-1 SUBUNIT
    Chains: E
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: DIHYDROPYRIDINE-SENSITIVE L-TYPE,SKELETAL MUSCLE CALCIUM CHANNEL SUBUNIT GAMMA
 
Molecule 5 - VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-1
    Chains: F
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: VOLTAGE-GATED CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-1

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 43)

Asymmetric/Biological Unit (5, 43)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA3Ligand/IonCALCIUM ION
3ETA1Mod. Amino AcidETHANOLAMINE
4NAG23Ligand/IonN-ACETYL-D-GLUCOSAMINE
5PC114Ligand/Ion1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:210 , ILE A:213 , LEU A:217 , ILE A:305 , TRP A:309 , ILE A:1230 , ALA A:1233 , PHE A:1234binding site for residue PC1 A 1902
02AC2SOFTWAREGLU A:76 , LYS A:162 , LEU A:576 , ARG A:584 , ALA A:626 , TYR A:627 , PRO A:633 , LEU A:636binding site for residue PC1 A 1903
03AC3SOFTWAREPRO A:521 , LEU A:522 , SER A:525 , VAL A:526 , PHE A:942 , MET A:1041 , ILE A:1043binding site for residue PC1 A 1904
04AC4SOFTWAREVAL A:898 , MET A:1288 , PHE A:1356binding site for residue PC1 A 1905
05AC5SOFTWAREMET A:193 , LEU A:196 , ASN A:649 , PHE A:1060 , PC1 A:1907binding site for residue PC1 A 1906
06AC6SOFTWAREPC1 A:1906binding site for residue PC1 A 1907
07AC7SOFTWAREASN A:649 , LEU A:652 , PHE A:1013 , ALA A:1053binding site for residue PC1 A 1908
08AC8SOFTWARESER A:322 , THR A:1321 , LEU A:1375binding site for residue PC1 A 1909
09AC9SOFTWARECA A:1917binding site for residue PC1 A 1910
10AD1SOFTWAREASP A:994 , LEU A:1001 , SER A:1002 , MET A:1005 , SER A:1333 , TYR A:1358 , TYR A:1359 , SER A:1363 , MET A:1366binding site for residue PC1 A 1911
11AD2SOFTWARELEU A:204 , ASN A:277 , PHE A:278 , MET A:282 , THR A:1132 , GLY A:1136 , HIS A:1139 , TYR A:1140 , HIS A:1141 , PC1 A:1913binding site for residue PC1 A 1912
12AD3SOFTWAREASN A:277 , PC1 A:1912binding site for residue PC1 A 1913
13AD4SOFTWAREILE A:1046binding site for residue PC1 A 1914
14AD5SOFTWAREASN A:307 , GLU A:308 , TRP A:311 , PRO A:1310 , GLN A:1311 , VAL A:1313binding site for residue PC1 A 1915
15AD6SOFTWAREGLU A:292 , GLU A:614 , GLU A:1014binding site for residue CA A 1916
16AD7SOFTWAREPC1 A:1910binding site for residue CA A 1917
17AD8SOFTWARESER F:263 , SER F:265 , ASP F:365 , GLY F:366binding site for residue CA F 1225
18AD9SOFTWAREASN A:257binding site for Mono-Saccharide NAG A 1901 bound to ASN A 257
19AE1SOFTWAREASN F:94 , GLU F:201 , ASP F:202binding site for Mono-Saccharide NAG F 1213 bound to ASN F 94
20AE2SOFTWAREARG F:116 , SER F:121 , ASN F:186 , SER F:189binding site for Poly-Saccharide residues BMA F 1207 through NAG F 1209 bound to ASN F 186
21AE3SOFTWAREASN F:326binding site for Mono-Saccharide NAG F 1203 bound to ASN F 326
22AE4SOFTWAREASN F:350binding site for Poly-Saccharide residues NAG F 1201 through NAG F 1202 bound to ASN F 350
23AE5SOFTWAREGLN F:110 , TRP F:115 , ASN F:470 , THR F:472 , LEU F:487binding site for Poly-Saccharide residues NAG F 1210 through BMA F 1212 bound to ASN F 470
24AE6SOFTWARELYS F:604 , ASN F:606binding site for Mono-Saccharide NAG F 1214 bound to ASN F 606
25AE7SOFTWAREASN F:615binding site for Poly-Saccharide residues NAG F 1204 through NAG F 1205 bound to ASN F 615
26AE8SOFTWAREASN F:678 , GLU F:681binding site for Poly-Saccharide residues NAG F 1217 through NAG F 1218 bound to ASN F 678
27AE9SOFTWAREASN F:784 , ARG F:876binding site for Mono-Saccharide NAG F 1219 bound to ASN F 784
28AF1SOFTWAREASP F:45 , GLY F:731 , ASN F:827binding site for Poly-Saccharide residues NAG F 1222 through NAG F 1224 bound to ASN F 827
29AF2SOFTWAREASN F:891binding site for Mono-Saccharide NAG F 1206 bound to ASN F 891
30AF3SOFTWAREPHE F:897 , ASN F:898 , PHE F:985binding site for Poly-Saccharide residues NAG F 1215 through NAG F 1216 bound to ASN F 898
31AF4SOFTWAREILE F:892 , SER F:893 , ASN F:988 , PHE F:993binding site for Mono-Saccharide NAG F 1221 bound to ASN F 988
32AF5SOFTWAREASN F:1001 , CYS F:1027binding site for Mono-Saccharide NAG F 1220 bound to ASN F 1001

(-) SS Bonds  (11, 11)

Asymmetric/Biological Unit
No.Residues
1A:226 -A:254
2A:245 -A:261
3A:957 -A:968
4A:1338 -A:1352
5E:57 -E:80
6F:305 -F:1047
7F:356 -F:1062
8F:406 -F:1074
9F:907 -F:977
10F:999 -F:1029
11F:1002 -F:1027

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:820 -Pro A:821
2Cys A:1439 -Pro A:1440
3Val F:894 -Tyr F:895

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GJV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GJV)

(-) Exons   (0, 0)

(no "Exon" information available for 5GJV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1276
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh..hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.........................................................hhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.............eeeee.......eeeee..eee......hhhhhhhhhhhh....hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhh..hhhhhhhhh........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh......ee..hhhhhhhh..............hhhhhhhhh....hhh.eehhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gjv A   32 FCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPEDDNNSLNLGLEKLEYFFLTVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTAILVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYAIIGLELFKGKMHKTCYYIGTDIVATVENEKPSPCARTGSGRPCTINGSECRGGWPGPNHGITHFDNFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLGVLSGEFTKEREKAKSRGTFQKLREKQQLEEDLRGYMSWITQGEVMWNRVFRWKCHDLVKSRVFYWLVILIVALNTLSIASEHHNQPLWLTHLQDIANRVLLSLFTIEMLLKMYGLGLRQYFMSIFNRFDCFVVCSGILELLLVESGAMTPLGISVLRCIRLLRLFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIIIFALLGMQLFGGRYDFEDTEVRRSNFDNFPQALISVFQVLTGEDWNSVMYNGIMAYGGPSYPGVLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESVRVLCHRIVNATWFTNFILLFILLSSAALAAEDPIRAESVRNQILGYFDIAFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNILDLLVVAVSLISMGLVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVLVTTLLQFMFACIGVQLFKGKFFSCNDLSKMTEEECRGYYYVYKDGDPTQMELRPRQWIHNDFHFDNVLSAMMSLFTVSTFEGWPQLLYRAIDSNEEDMGPVYNNRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYKNCELDKNQRQCVQYALKARPLRCYIPKNPYQYQVWYVVTSSYFEYLMFALIMLNTICLGMQHYHQSEEMNHISDILNVAFTIIFTLEMILKLLAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFRISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALVDGTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAPGEEYTCGTNFAYYYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKAIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIGD 1515
                                    41        51        61        71        81        91       101       111       121       131       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372   ||  422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662      |790       800       810       820       830       840       850       860       870       880    || 896       906       916       926       936       946       956       966       976       986       996      1006      1016      1026      1036      1046      1056      1066      1076      1086      1096      1106      1116      1126      1136      1146      1156      1166      1176      1186      1196      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479      1489      1499      1509      
                                                                                                                                     139|                                                                                                                                                                                                                    376|                                                                                                                                                                                                                                                         669|                                                                                              885|                                                                                                                                                                                                                                                                                                                     1205|                                                                                                                                                                                                                                                                                              
                                                                                                                                      161                                                                                                                                                                                                                     417                                                                                                                                                                                                                                                          788                                                                                               892                                                                                                                                                                                                                                                                                                                      1229                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:100
                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh......eeeee......hhhhh..............eeeeeee....eeeeee.......eeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                5gjv B   75 QGPHMALRKEAERQALAQLEKAKTKPVAFAVRTNVGYNPSPGDEVPVEGVAITFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGFIPSPVKLDSLRLLQEQ  174
                                    84        94       104       114       124       134       144       154       164       174


Chain C from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeee......hhhhhhhhhhhhhhhhhhh...eeeeee..hhhhh..hhhhhhhhhhhhhhhh....eeeeee....hhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee...hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gjv C  265 VPPYDVVPSMRPIILVGPSLKGYEVTDMMQKALFDFLKHLFDGRISITRVTADISLARSSLAEVQSEIERIFELARTLQLVALDADTINHPAQLSKTSLAPIIVYIKITSPKVLQRLIKSRGKSQSKHLNVQIAASEKLAQCPPEMFDIILDENQLEDACEHLAEYLEAYWKATHPPS  461
                                   274       284       294       304       314      |343       353       363       373       383       393       403       413       423       433       443       453        
                                                                                  321|                                                                                                                        
                                                                                   341                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....eee.....eeee...eeee...hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gjv E    1 MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHCEAAHFGLWRICTKRGEKNCSYFSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRMPQNPWESCM  216
                                    10        20        30       |47        57  ||    82||     112       122       132       142       152       162  ||   180       190       200       210      
                                                                38|            60|     83|                                                          165|                                          
                                                                 46             76     104                                                           174                                          


Chain F from PDB  Type:PROTEIN  Length:942
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........................eee....eee.....eee..........hhhhhhhhh.hhhhhhhhhhhhh.....eeee.....eee............hhhhh..........ee..eeee......hhhhhhhhhhhhhhhhhh.......eeee...ee.............hhhhhhhhhhhhh.......hhhhhhhhhhhh..........eeeeeeee......hhhhhhhhh.....eeeeeee......hhhhhhhhhhh..eeeee....hhhhhh.hhhhhhhhhhhh........eeeeeee......eeeeeeeeee................eeeeeeeeeehhhhhh...............ee...ee......................................hhhhhh....hhhhhhhhhh....eeeeeeeeee......eeeeeeeeeeee.......eeeeeee....ee........hhhhhhhhhhhhhhh....eeee.............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............eeee...eeee...hhhhhh..........hhhhhhhh.....................eeeeee............eeeeeeehhhhhhhhhhhh.....eeee.....eeee...........hhhhhhhhhhhhhhhh...eeeeeee...ee.......ee.eeeeeeee.......eeeeee....eeeeeeeee....eeeeee................eeee...hhhhhh......................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5gjv F   29 FPSAVTIKSWVDKMQEDLVTLAKTASGVHQLVDIYEKYQDLYTVEPNNARQLVEIAARDIEKLLSNRSKALVRLALEAEKVQAAHQWREDFASVVYYNAKDQRIKPVFIDDANFRRQVSYQHAAVHIPTDIYEGSTIVLNELNWTSALDDVFKKNREEDPSLLWQVFGSATGLARYYPASPWVKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTLPVFNITGQFENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKPIGVGIPTINLRKRRPNVQNPKSQEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFLAPRDYCSDLKPSDNNTEFLLNFNEFIDRKTTDLINRVLLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYESGIMVSKAVEIYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCEPGAASKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLIFIMVESKGTCPCDTRLLIQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDCx 1075
                                    38        48        58        68        78        88        98       108       118  ||   132||     153       163       173       183       193       203       213       223  ||   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690   ||  707       717       727       737       747       757       767       777       787       797       807       817       827      |853       863       873       883       893       903       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073 |
                                                                                                                      121|    133|                                                                              226|                                                                                                                                                                                                                                                                                                                                                                                                                                                                         694|                                                                                                                                 834|                                                          912|                                                                                                  1075-ETA
                                                                                                                       126     145                                                                               234                                                                                                                                                                                                                                                                                                                                                                                                                                                                          702                                                                                                                                  851                                                           973
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GJV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GJV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GJV)

(-) Gene Ontology  (19, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Cis Peptide Bonds
    Asp A:820 - Pro A:821   [ RasMol ]  
    Cys A:1439 - Pro A:1440   [ RasMol ]  
    Val F:894 - Tyr F:895   [ RasMol ]  
 

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  5gjv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CA2D1_RABIT | P13806: 3jbr 5gjw
        CAC1S_RABIT | P07293: 1du1 1jzp 1t3l 3jbr 5gjw
        CACB1_RABIT | P19517: 5gjw
        CCG1_RABIT | P19518: 3jbr 5gjw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GJV)