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5GJV
Asym. Unit
Info
Asym.Unit (467 KB)
Biol.Unit 1 (449 KB)
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(1)
Title
:
STRUCTURE OF THE MAMMALIAN VOLTAGE-GATED CALCIUM CHANNEL CAV1.1 COMPLEX AT NEAR ATOMIC RESOLUTION
Authors
:
J. P. Wu, Z. Yan, Z. Q. Li, Q. Zhou, N. Yan
Date
:
02 Jul 16 (Deposition) - 14 Sep 16 (Release) - 21 Sep 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,E,F
Biol. Unit 1: A,B,C,E,F (1x)
Keywords
:
Complex, Channel, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Wu, Z. Yan, Z. Q. Li, X. Y. Qian, S. Lu, M. Q. Dong, Q. Zhou, N. Yan
Structure Of The Voltage-Gated Calcium Channel Cav1. 1 At 3. Angstrom Resolution
Nature V. 537 191 2016
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Hetero Components
(5, 43)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: ETHANOLAMINE (ETAa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
5b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1b)
5c: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1c)
5d: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1d)
5e: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1e)
5f: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1f)
5g: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1g)
5h: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1h)
5i: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1i)
5j: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1j)
5k: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1k)
5l: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1l)
5m: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1m)
5n: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
3
Ligand/Ion
CALCIUM ION
3
ETA
1
Mod. Amino Acid
ETHANOLAMINE
4
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PC1
14
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:210 , ILE A:213 , LEU A:217 , ILE A:305 , TRP A:309 , ILE A:1230 , ALA A:1233 , PHE A:1234
binding site for residue PC1 A 1902
02
AC2
SOFTWARE
GLU A:76 , LYS A:162 , LEU A:576 , ARG A:584 , ALA A:626 , TYR A:627 , PRO A:633 , LEU A:636
binding site for residue PC1 A 1903
03
AC3
SOFTWARE
PRO A:521 , LEU A:522 , SER A:525 , VAL A:526 , PHE A:942 , MET A:1041 , ILE A:1043
binding site for residue PC1 A 1904
04
AC4
SOFTWARE
VAL A:898 , MET A:1288 , PHE A:1356
binding site for residue PC1 A 1905
05
AC5
SOFTWARE
MET A:193 , LEU A:196 , ASN A:649 , PHE A:1060 , PC1 A:1907
binding site for residue PC1 A 1906
06
AC6
SOFTWARE
PC1 A:1906
binding site for residue PC1 A 1907
07
AC7
SOFTWARE
ASN A:649 , LEU A:652 , PHE A:1013 , ALA A:1053
binding site for residue PC1 A 1908
08
AC8
SOFTWARE
SER A:322 , THR A:1321 , LEU A:1375
binding site for residue PC1 A 1909
09
AC9
SOFTWARE
CA A:1917
binding site for residue PC1 A 1910
10
AD1
SOFTWARE
ASP A:994 , LEU A:1001 , SER A:1002 , MET A:1005 , SER A:1333 , TYR A:1358 , TYR A:1359 , SER A:1363 , MET A:1366
binding site for residue PC1 A 1911
11
AD2
SOFTWARE
LEU A:204 , ASN A:277 , PHE A:278 , MET A:282 , THR A:1132 , GLY A:1136 , HIS A:1139 , TYR A:1140 , HIS A:1141 , PC1 A:1913
binding site for residue PC1 A 1912
12
AD3
SOFTWARE
ASN A:277 , PC1 A:1912
binding site for residue PC1 A 1913
13
AD4
SOFTWARE
ILE A:1046
binding site for residue PC1 A 1914
14
AD5
SOFTWARE
ASN A:307 , GLU A:308 , TRP A:311 , PRO A:1310 , GLN A:1311 , VAL A:1313
binding site for residue PC1 A 1915
15
AD6
SOFTWARE
GLU A:292 , GLU A:614 , GLU A:1014
binding site for residue CA A 1916
16
AD7
SOFTWARE
PC1 A:1910
binding site for residue CA A 1917
17
AD8
SOFTWARE
SER F:263 , SER F:265 , ASP F:365 , GLY F:366
binding site for residue CA F 1225
18
AD9
SOFTWARE
ASN A:257
binding site for Mono-Saccharide NAG A 1901 bound to ASN A 257
19
AE1
SOFTWARE
ASN F:94 , GLU F:201 , ASP F:202
binding site for Mono-Saccharide NAG F 1213 bound to ASN F 94
20
AE2
SOFTWARE
ARG F:116 , SER F:121 , ASN F:186 , SER F:189
binding site for Poly-Saccharide residues BMA F 1207 through NAG F 1209 bound to ASN F 186
21
AE3
SOFTWARE
ASN F:326
binding site for Mono-Saccharide NAG F 1203 bound to ASN F 326
22
AE4
SOFTWARE
ASN F:350
binding site for Poly-Saccharide residues NAG F 1201 through NAG F 1202 bound to ASN F 350
23
AE5
SOFTWARE
GLN F:110 , TRP F:115 , ASN F:470 , THR F:472 , LEU F:487
binding site for Poly-Saccharide residues NAG F 1210 through BMA F 1212 bound to ASN F 470
24
AE6
SOFTWARE
LYS F:604 , ASN F:606
binding site for Mono-Saccharide NAG F 1214 bound to ASN F 606
25
AE7
SOFTWARE
ASN F:615
binding site for Poly-Saccharide residues NAG F 1204 through NAG F 1205 bound to ASN F 615
26
AE8
SOFTWARE
ASN F:678 , GLU F:681
binding site for Poly-Saccharide residues NAG F 1217 through NAG F 1218 bound to ASN F 678
27
AE9
SOFTWARE
ASN F:784 , ARG F:876
binding site for Mono-Saccharide NAG F 1219 bound to ASN F 784
28
AF1
SOFTWARE
ASP F:45 , GLY F:731 , ASN F:827
binding site for Poly-Saccharide residues NAG F 1222 through NAG F 1224 bound to ASN F 827
29
AF2
SOFTWARE
ASN F:891
binding site for Mono-Saccharide NAG F 1206 bound to ASN F 891
30
AF3
SOFTWARE
PHE F:897 , ASN F:898 , PHE F:985
binding site for Poly-Saccharide residues NAG F 1215 through NAG F 1216 bound to ASN F 898
31
AF4
SOFTWARE
ILE F:892 , SER F:893 , ASN F:988 , PHE F:993
binding site for Mono-Saccharide NAG F 1221 bound to ASN F 988
32
AF5
SOFTWARE
ASN F:1001 , CYS F:1027
binding site for Mono-Saccharide NAG F 1220 bound to ASN F 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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