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(-) Description

Title :  HUMANIZED YEAST ACC CARBOXYLTRANSFERASE DOMAIN BOUND TO 6,7-DIMETHYL-1'-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]SPIRO[CHROMENE-2,4'-PIPERIDIN]-4(3H)-ONE
 
Authors :  F. F. Vajdos
Date :  23 Jul 15  (Deposition) - 14 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Acc, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. W. Kung, D. A. Griffith, W. P. Esler, F. F. Vajdos, A. M. Mathiowetz, S. D. Doran, P. A. Amor, S. W. Bagley, T. Banks, S. Cabral, K. Ford, C. N. Garcia-Irizarry, M. S. Landis, K. Loomis, K. Mcpherson, M. Niosi K. L. Rockwell, C. Rose, A. C. Smith, J. A. Southers, S. Tapley, M. Tu, J. J. Valentine
Discovery Of Spirocyclic-Diamine Inhibitors Of Mammalian Acetyl Coa-Carboxylase.
Bioorg. Med. Chem. Lett. V. 25 5352 2015
PubMed-ID: 26411795  |  Reference-DOI: 10.1016/J.BMCL.2015.09.035

(-) Compounds

Molecule 1 - ACETYL-COA CARBOXYLASE
    Chains: A, B, C
    EC Number: 6.4.1.2, 6.3.4.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CARBOXYLTRANSFERASE DOMAIN (UNP RESIDUES 1476-2233)
    Gene: ACC1, ABP2, FAS3, MTR7, YNR016C, N3175
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: ACC, FATTY ACID SYNTHETASE 3, MRNA TRANSPORT-DEFECTIVE PROTEIN 7

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
157J3Ligand/Ion6,7-DIMETHYL-1'-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]SPIRO[CHROMENE-2,4'-PIPERIDIN]-4(3H)-ONE
2SO45Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
157J2Ligand/Ion6,7-DIMETHYL-1'-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]SPIRO[CHROMENE-2,4'-PIPERIDIN]-4(3H)-ONE
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
157J2Ligand/Ion6,7-DIMETHYL-1'-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]SPIRO[CHROMENE-2,4'-PIPERIDIN]-4(3H)-ONE
2SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:1757 , ALA A:1761 , LYS A:1764 , VAL A:1765 , VAL A:1923 , ARG A:1954 , PHE A:1956 , SER A:1957 , GLY A:1958 , LEU A:2025 , GLU A:2026 , GLY A:2029 , GLU A:2032 , HOH A:2603binding site for residue 57J A 2301
2AC2SOFTWAREARG A:2154 , SER A:2157 , TRP A:2158 , LYS A:2185binding site for residue SO4 A 2302
3AC3SOFTWAREGLU A:1750 , GLY A:1751 , LEU A:1775 , GLY A:1779 , THR A:1780 , GLN A:1781binding site for residue SO4 A 2303
4AC4SOFTWAREVAL B:1923 , ARG B:1954 , PHE B:1956 , GLY B:1958 , LEU B:2025 , GLU B:2026 , GLY B:2029 , GLU B:2032 , HOH B:2435 , HOH B:2531 , THR C:1757 , ALA C:1761 , LEU C:1762 , LYS C:1764 , VAL C:1765binding site for residue 57J B 2301
5AC5SOFTWARETHR B:1757 , ALA B:1761 , LEU B:1762 , LYS B:1764 , VAL B:1765 , ARG C:1954 , PHE C:1956 , GLY C:1958 , LEU C:2025 , GLU C:2026 , GLY C:2029 , GLU C:2032 , HOH C:2503binding site for residue 57J C 2301
6AC6SOFTWAREARG C:2125 , ARG C:2128 , HIS C:2165 , GLU C:2166 , HOH C:2465binding site for residue SO4 C 2302
7AC7SOFTWAREARG C:2154 , TRP C:2158 , LYS C:2185 , LEU C:2189binding site for residue SO4 C 2303
8AC8SOFTWAREGLY C:1751 , LEU C:1775 , GLY C:1779 , THR C:1780 , GLN C:1781 , HOH C:2666binding site for residue SO4 C 2304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CTB)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:1481 -Pro A:1482
2Arg B:1481 -Pro B:1482

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CTB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CTB)

(-) Exons   (0, 0)

(no "Exon" information available for 5CTB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:695
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee.....eeee..........eeeeeeee........eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh...eeee....hhhh.eeeeeehhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeeee...eehhhhhhhhhh..eeee....ee..hhhhhhhhhh......hhhhhhhhhhh......eee.hhhhhhhhhhhhhh.................................hhhhhhhheee..eee.........eee.......eeeeeeee..eeeeeeee....eeeee...........eeeee...eehhhhhhhhhhhhhhhhh.....eeee....ee..hhhhhhhhhhhhhhhhhhhhhh....eeeee....eehhhhhhhhhhhhhh..eeeeee...ee...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ctb A 1480 LRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNRLDDHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFA 2195
                                  1489      1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619      1629      1639      1649      1659      1669      1679      1689      1699      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049|     2077      2087      2097      2107      2117      2127      2137    ||2150      2160      2170      2180      2190     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  2049|                                                                      2142|                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   2068                                                                       2146                                                 


Chain B from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee.....eeee..........eeeeeeee........eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh...eeee....hhhh.eeeeeehhhhhhhhhhh.hhh.eeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeeee...eehhhhhhhhhh.eeeee....ee..hhhhhhhhhh......hhhhhhhhhhh......eee.hhhhhhhhhhhhhh.................................hhhhhhhheee..eee.........eee.......eeeeeeee..eeeeeeee....eeeee...........eeeee...eehhhhhhhhhhhhhhhhh.....eee.....ee..hhhhhhhhhhhhhhhhhhhhhh....eeeee....eehhhhhhh.hhhhhh..eeeeee...ee...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ctb B 1480 LRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGL 2189
                                  1489      1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619      1629      1639      1649      1659      1669      1679      1689      1699      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039     |2082      2092      2102      2112      2122      2132      2146      2156      2166      2176      2186   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              2045|                                                          2141|                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               2079                                                           2146                                           


Chain C from PDB  Type:PROTEIN  Length:672
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee.....eeee..........eeeeeeeeee..eeeeeeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh...eee...eeeehhhhhhhhhhh.hhh.eeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeeee...eehhhhhhhhhh.eeeee....ee..hhhhhhhhhh......hhhhhhhhhhh......eee.hhhhhhhhhhhhhh.................................hhhhhhhheee..eee.........eee.......eeeeeeee..eeeeeeee....eeeee...........eeeee...eehhhhhhhhhhhhhhhhh.....eee.....ee..hhhhhhhhhhhhhhhhhhhhhh....eeeee....eeehhhhhhhhhhhhh..eeeeee...eee..hhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5ctb C 1493 LQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWFQYLYLTSEGMETLKKFDKENSVLTERTVERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLE 2192
                                  1502      1512      1522      1532      1542      1552      1562      1572      1582      1592      1602      1612      1622      1632      1642||    1661      1671      1681|     1695      1705      1715      1725      1735      1745      1755      1765      1775      1785      1795      1805      1815      1825      1835      1845      1855      1865      1875      1885      1895      1905      1915      1925      1935      1945      1955      1965      1975      1985      1995      2005      2015      2025      2035      2045|     2058|     2077      2087      2097      2107      2117      2127      2137    ||2150      2160      2170      2180      2190  
                                                                                                                                                                               1643|                        1681|                                                                                                                                                                                                                                                                                                                                                                   2045|     2058|                                                                      2142|                                              
                                                                                                                                                                                1653                         1686                                                                                                                                                                                                                                                                                                                                                                    2049      2068                                                                       2146
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CTB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CTB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CTB)

(-) Gene Ontology  (19, 19)

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        ACAC_YEAST | Q00955: 1od2 1od4 1uyr 1uys 1uyt 1uyv 1w2x 1w93 1w96 3h0j 3h0q 3h0s 3k8x 3pgq 3tv5 3tvu 3tvw 3tz3 4wyo 4wz8 5cs0 5cs4 5csa 5csk 5csl 5ctc 5cte 5i6e 5trc

(-) Related Entries Specified in the PDB File

5ctc 5cte