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(-) Description

Title :  HUMANIZED YEAST ACC CARBOXYLTRANSFERASE DOMAIN BOUND TO 2,2-DIMETHYLPROPYL (1S)-1-METHYL-8-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]-2,8-DIAZASPIRO[4.5]DECANE-2-CARBOXYLATE
 
Authors :  F. F. Vajdos
Date :  23 Jul 15  (Deposition) - 14 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  B,C
Keywords :  Acc, Inhibitors, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. W. Kung, D. A. Griffith, W. P. Esler, F. F. Vajdos, A. M. Mathiowetz, S. D. Doran, P. A. Amor, S. W. Bagley, T. Banks, S. Cabral, K. Ford, C. N. Garcia-Irizarry, M. S. Landis, K. Loomis, K. Mcpherson, M. Niosi K. L. Rockwell, C. Rose, A. C. Smith, J. A. Southers, S. Tapley, M. Tu, J. J. Valentine
Discovery Of Spirocyclic-Diamine Inhibitors Of Mammalian Acetyl Coa-Carboxylase.
Bioorg. Med. Chem. Lett. V. 25 5352 2015
PubMed-ID: 26411795  |  Reference-DOI: 10.1016/J.BMCL.2015.09.035

(-) Compounds

Molecule 1 - ACETYL-COA CARBOXYLASE
    Chains: B, C
    EC Number: 6.4.1.2, 6.3.4.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CARBOXYLTRANSFERASE DOMAIN (UNP RESIDUES 1476-2233)
    Gene: ACC1, ABP2, FAS3, MTR7, YNR016C, N3175
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: ACC, FATTY ACID SYNTHETASE 3, MRNA TRANSPORT-DEFECTIVE PROTEIN 7

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : BC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
157L2Ligand/Ion2,2-DIMETHYLPROPYL (1S)-1-METHYL-8-[(7-METHYL-1H-INDAZOL-5-YL)CARBONYL]-2,8-DIAZASPIRO[4.5]DECANE-2-CARBOXYLATE
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:1954 , GLY B:1955 , PHE B:1956 , SER B:1957 , GLY B:1958 , LEU B:2025 , GLU B:2026 , GLU B:2028 , GLY B:2029 , GLU B:2032 , HOH B:2519 , LEU C:1762 , LYS C:1764 , VAL C:1765binding site for residue 57L B 2301
2AC2SOFTWARETHR B:1757 , ALA B:1761 , LEU B:1762 , VAL B:1765 , ARG C:1954 , PHE C:1956 , SER C:1957 , GLY C:1958 , LEU C:2025 , GLU C:2026 , GLU C:2028 , GLY C:2029 , GLU C:2032 , HOH C:2660binding site for residue 57L C 2301
3AC3SOFTWAREARG C:2154 , TRP C:2158 , LYS C:2185binding site for residue SO4 C 2302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CTE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg B:1481 -Pro B:1482

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CTE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CTE)

(-) Exons   (0, 0)

(no "Exon" information available for 5CTE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:728
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee.....eeee..........eeeeeeee........eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh...eeee....hhhh.eeeeeehhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeeee...eehhhhhhhhhh..eeee....ee..hhhhhhhhhh......hhhhhhhhhhh......eee.hhhhhhhhhhhhhh.................................hhhhhhhheee..eee.........eee.......eeeeeeee..eeeeeeee....eeeee...........eeeee...eehhhhhhhhhhhhhhhhh.....eee.....ee..hhhhhhhhhhhhhhhhhhhhhhh...eeeee....eehhhhhhh.hhhhhh..eeeeee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cte B 1480 LRPIATPYPVKEWLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNRLDDKYRELRQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLSEVTDDKEKLLKTLKL 2234
                                  1489      1499      1509      1519      1529      1539      1549      1559      1569      1579      1589      1599      1609      1619      1629      1639      1649      1659      1669      1679      1689      1699      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869      1879      1889      1899      1909      1919      1929      1939      1949      1959      1969      1979      1989      1999      2009      2019      2029      2039      2049     |2077      2087      2097      2107      2117      2127      2137   || 2151      2161      2171      2181      2191      2201      2211    ||2226        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        2055|                                                               2141|                                                                  2216|            
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         2074                                                                2146                                                                   2222            


Chain C from PDB  Type:PROTEIN  Length:721
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhh.eeeeeeee.....eeee..........eeeeeeee........eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh...eeee....hhhh.eeeeeehhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.eeeee...eehhhhhhhhhh.eeeee....ee..hhhhhhhhhh......hhhhhhhhhhh......eee.hhhhhhhhhhhhhh.................................hhhhhhhheee..eee.........eee.......eeeeeeee..eeeeeeee....eeeee...........eeeee.....hhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhhhhhhhhhhhhhhh...eeeee....eehhhhhhh.hhhhhh..eeeeee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cte C 1492 WLQPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGNAIDGLSEVIKMLSTDDKEKLLKTLK 2233
                                  1501      1511      1521      1531      1541      1551      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651      1661      1671      1681      1691      1701      1711      1721      1731      1741      1751      1761      1771      1781      1791      1801      1811      1821      1831      1841      1851      1861      1871      1881      1891      1901      1911      1921      1931      1941      1951      1961      1971      1981      1991      2001      2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111      2121      2131      2141 ||   2153      2163      2173      2183    ||2212      2222      2232 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    2143|                                      2188|                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     2146                                       2208
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CTE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CTE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CTE)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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        ACAC_YEAST | Q00955: 1od2 1od4 1uyr 1uys 1uyt 1uyv 1w2x 1w93 1w96 3h0j 3h0q 3h0s 3k8x 3pgq 3tv5 3tvu 3tvw 3tz3 4wyo 4wz8 5cs0 5cs4 5csa 5csk 5csl 5ctb 5ctc 5i6e 5trc

(-) Related Entries Specified in the PDB File

5ctb 5ctc