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(-) Description

Title :  2.95A STRUCTURE OF MOXIFLOXACIN WITH S.AUREUS DNA GYRASE AND DNA
 
Authors :  B. D. Bax, V. Srikannathasan, P. F. Chan
Date :  04 Jul 15  (Deposition) - 16 Dec 15  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D,E,F,R,S,T,U,V,W
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  R,S,T,U,V,W  (1x)
Keywords :  Type Iia Topoisomerase, Antibacterial, Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. F. Chan, V. Srikannathasan, J. Huang, H. Cui, A. P. Fosberry, M. Gu, M. M. Hann, M. Hibbs, P. Homes, K. Ingraham, J. Pizzollo, C. Shen, A. J. Shillings, C. E. Spitzfaden, R. Tanner, A. J. Theobald, R. A. Stavenger, B. D. Bax, M. N. Gwynn
Structural Basis Of Dna Gyrase Inhibition By Antibacterial Qpt-1, Anticancer Drug Etoposide And Moxifloxacin.
Nat Commun V. 6 10048 2015
PubMed-ID: 26640131  |  Reference-DOI: 10.1038/NCOMMS10048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA GYRASE SUBUNIT A
    Chains: A, C, R, T
    EC Number: 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 10-490
    Gene: GYRA, SA0006
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN N315)
    Organism Taxid: 158879
    Strain: N315
 
Molecule 2 - DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B
    Chains: B, D, S, U
    EC Number: 5.99.1.3, 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 414-640,UNP RESIDUES 414-640
    Gene: GYRB, SA0005
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN N315)
    Organism Taxid: 158879
    Strain: N315
 
Molecule 3 - DNA (5'- D(P*GP*AP*GP*CP*GP*TP*AP*T*GP*GP*CP*CP*AP*TP*AP*CP*GP*CP*TP*T)-3')
    Chains: E, F, V, W
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFRSTUVW
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       RSTUVW

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 32)

Asymmetric Unit (4, 32)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MFX6Ligand/Ion1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7-[(4AS,7AS)-OCTAHYDRO-6H-PYRROLO[3,4-B]PYRIDIN-6-YL]-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
3MG14Ligand/IonMAGNESIUM ION
4PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MFX3Ligand/Ion1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7-[(4AS,7AS)-OCTAHYDRO-6H-PYRROLO[3,4-B]PYRIDIN-6-YL]-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (3, 9)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MFX3Ligand/Ion1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7-[(4AS,7AS)-OCTAHYDRO-6H-PYRROLO[3,4-B]PYRIDIN-6-YL]-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
4PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMFX E:2101 , HOH E:2201 , HOH E:2211 , HOH E:2213 , HOH F:2214binding site for residue MG A 501
02AC2SOFTWARETYR A:322 , LYS A:323 , THR A:325 , GLN A:328binding site for residue MG A 502
03AC3SOFTWAREASP A:148 , GLY A:152 , ASN A:153 , GLU A:154 , ARG A:155binding site for residue GOL A 503
04AC4SOFTWAREARG A:385 , LEU A:388 , ASP A:389 , ARG A:438 , GLU A:442binding site for residue GOL A 504
05AC5SOFTWAREASP B:508 , ASP B:510 , HOH B:1107 , HOH B:1111 , HOH B:1116binding site for residue MG B 1001
06AC6SOFTWAREHOH E:2214 , MFX F:2101 , HOH F:2201 , HOH F:2208 , HOH F:2213binding site for residue MG C 501
07AC7SOFTWARETYR C:322 , LYS C:323 , THR C:325 , GLN C:328binding site for residue MG C 502
08AC8SOFTWAREASP C:148 , GLY C:152 , ASN C:153 , GLU C:154 , ARG C:155binding site for residue GOL C 503
09AC9SOFTWAREARG C:377 , LEU C:384 , ALA C:424 , ARG C:432binding site for residue GOL C 504
10AD1SOFTWAREASP D:508 , ASP D:510 , HOH D:1101 , HOH D:1102 , HOH D:1103 , HOH D:1104binding site for residue MG D 1001
11AD2SOFTWARESER A:84 , MG A:501 , GLY B:459 , GLU B:477 , ARG C:122 , DC E:2012 , DA E:2013 , HOH E:2201 , HOH E:2211 , HOH E:2213 , DT F:8 , DG F:2009 , HOH F:2214binding site for residue MFX E 2101
12AD3SOFTWAREARG A:122 , PTR A:123 , SER C:84 , MG C:501 , ASP D:437 , ARG D:458 , DT E:8 , DG E:2009 , DC F:2012 , DA F:2013 , HOH F:2201 , HOH F:2208 , HOH F:2213binding site for residue MFX F 2101
13AD4SOFTWAREMFX F:2103 , HOH F:2207 , HOH F:2212binding site for residue MG F 2102
14AD5SOFTWAREDT E:2019 , DG F:1 , DA F:2 , MG F:2102 , HOH F:2207 , HOH F:2212binding site for residue MFX F 2103
15AD6SOFTWAREMFX V:2101 , HOH V:2201 , HOH V:2204 , HOH V:2206 , HOH W:2210binding site for residue MG R 4301
16AD7SOFTWAREGLY R:152 , ASN R:153 , GLU R:154 , ARG R:155binding site for residue GOL R 4302
17AD8SOFTWAREARG R:366 , THR R:367 , ASN R:370 , TYR R:451 , GLU R:454 , HOH R:4426binding site for residue GOL R 4303
18AD9SOFTWAREGLN R:56 , ARG R:69 , ASP R:73 , GLN T:56 , ARG T:69 , ASP T:73binding site for residue GOL R 4304
19AE1SOFTWAREASP S:508 , ASP S:510 , HOH S:1102 , HOH S:1107 , HOH S:1108 , HOH S:1110binding site for residue MG S 1001
20AE2SOFTWAREHOH V:2207 , MFX W:2101 , HOH W:2201 , HOH W:2208 , HOH W:2209binding site for residue MG T 4501
21AE3SOFTWARETYR T:322 , LYS T:323 , THR T:325 , GLN T:328binding site for residue MG T 4502
22AE4SOFTWAREASP T:148 , GLY T:152 , ASN T:153 , GLU T:154 , ARG T:155binding site for residue GOL T 4503
23AE5SOFTWAREASP U:508 , ASP U:510 , HOH U:1102 , HOH U:1103 , HOH U:1104 , HOH U:1105binding site for residue MG U 1001
24AE6SOFTWARESER R:84 , MG R:4301 , GLU S:477 , ARG T:122 , DC V:2012 , DA V:2013 , HOH V:2201 , HOH V:2204 , HOH V:2206 , DT W:8 , DG W:2009binding site for residue MFX V 2101
25AE7SOFTWAREARG R:122 , PTR R:123 , SER T:84 , MG T:4501 , ASP U:437 , GLU U:477 , DT V:8 , DG V:2009 , DC W:2012 , DA W:2013 , HOH W:2201 , HOH W:2208 , HOH W:2209binding site for residue MFX W 2101
26AE8SOFTWAREMFX W:2103 , HOH W:2202 , HOH W:2206binding site for residue MG W 2102
27AE9SOFTWAREDT V:2019 , DG W:1 , DA W:2 , MG W:2102 , HOH W:2202 , HOH W:2206binding site for residue MFX W 2103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CDQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CDQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CDQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CDQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CDQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeee......eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq A   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 
                                                                                                                                           123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhh.eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq B  415 PGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVY  639
                                   424       434       444       454       464       474       484       494       504       514       524       534       544||     588       598       608       618       628       638 
                                                                                                                                                            545|                                                           
                                                                                                                                                             580                                                           


Chain C from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq C   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 
                                                                                                                                           123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeee..hhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhhhh..hhhhh........eeee....hhhhhhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq D  414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNA  637
                                   423       433       443       453       463       473       483       493       503       513       523       533       543 ||    587       597       607       617       627       637
                                                                                                                                                             545|                                                         
                                                                                                                                                              580                                                         


Chain E from PDB  Type:DNA  Length:20
                                                     
                5cdq E    1 GAGCGTATGGCCATACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain F from PDB  Type:DNA  Length:20
                                                     
                5cdq F    1 GAGCGTATGGCCATACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain R from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq R   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 
                                                                                                                                           123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain S from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq S  414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA  640
                                   423       433       443       453       463       473       483       493       503       513       523       533       543 ||    587       597       607       617       627       637   
                                                                                                                                                             545|                                                            
                                                                                                                                                              580                                                            


Chain T from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeee.......eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdq T   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 
                                                                                                                                           123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain U from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh....eeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee............hhhhhhhhhh......eeeee..hhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cdq U  414 LPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVY  639
                                   423       433       443       453       463       473       483       493       503       513       523       533       543 ||    587       597       607       617       627       637  
                                                                                                                                                             545|                                                           
                                                                                                                                                              580                                                           


Chain V from PDB  Type:DNA  Length:20
                                                     
                5cdq V    1 GAGCGTATGGCCATACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain W from PDB  Type:DNA  Length:20
                                                     
                5cdq W    1 GAGCGTATGGCCATACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CDQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CDQ)

(-) Pfam Domains  (0, 0)

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  GYRB_STAAN | P66937
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  5.99.1.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GYRA_STAAN | Q99XG5: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdo 5cdp 5cdr 5iwi 5iwm 5npk 5npp
        GYRB_STAAN | P66937: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdo 5cdp 5cdr 5iwi 5iwm 5npk 5npp

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CDQ)