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5CDQ
Biol. Unit 2
Info
Asym.Unit (992 KB)
Biol.Unit 1 (492 KB)
Biol.Unit 2 (492 KB)
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(1)
Title
:
2.95A STRUCTURE OF MOXIFLOXACIN WITH S.AUREUS DNA GYRASE AND DNA
Authors
:
B. D. Bax, V. Srikannathasan, P. F. Chan
Date
:
04 Jul 15 (Deposition) - 16 Dec 15 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: R,S,T,U,V,W (1x)
Keywords
:
Type Iia Topoisomerase, Antibacterial, Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. F. Chan, V. Srikannathasan, J. Huang, H. Cui, A. P. Fosberry, M. Gu, M. M. Hann, M. Hibbs, P. Homes, K. Ingraham, J. Pizzollo, C. Shen, A. J. Shillings, C. E. Spitzfaden, R. Tanner, A. J. Theobald, R. A. Stavenger, B. D. Bax, M. N. Gwynn
Structural Basis Of Dna Gyrase Inhibition By Antibacterial Qpt-1, Anticancer Drug Etoposide And Moxifloxacin.
Nat Commun V. 6 10048 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXa)
2b: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXb)
2c: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXc)
2d: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXd)
2e: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXe)
2f: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
4a: O-PHOSPHOTYROSINE (PTRa)
4b: O-PHOSPHOTYROSINE (PTRb)
4c: O-PHOSPHOTYROSINE (PTRc)
4d: O-PHOSPHOTYROSINE (PTRd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MFX
3
Ligand/Ion
1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7-[(4AS,7AS)-OCTAHYDRO-6H-PYRROLO[3,4-B]PYRIDIN-6-YL]-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(13, 13)
Info
All Sites
01: AD6 (SOFTWARE)
02: AD7 (SOFTWARE)
03: AD8 (SOFTWARE)
04: AD9 (SOFTWARE)
05: AE1 (SOFTWARE)
06: AE2 (SOFTWARE)
07: AE3 (SOFTWARE)
08: AE4 (SOFTWARE)
09: AE5 (SOFTWARE)
10: AE6 (SOFTWARE)
11: AE7 (SOFTWARE)
12: AE8 (SOFTWARE)
13: AE9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AD6
SOFTWARE
MFX V:2101 , HOH V:2201 , HOH V:2204 , HOH V:2206 , HOH W:2210
binding site for residue MG R 4301
02
AD7
SOFTWARE
GLY R:152 , ASN R:153 , GLU R:154 , ARG R:155
binding site for residue GOL R 4302
03
AD8
SOFTWARE
ARG R:366 , THR R:367 , ASN R:370 , TYR R:451 , GLU R:454 , HOH R:4426
binding site for residue GOL R 4303
04
AD9
SOFTWARE
GLN R:56 , ARG R:69 , ASP R:73 , GLN T:56 , ARG T:69 , ASP T:73
binding site for residue GOL R 4304
05
AE1
SOFTWARE
ASP S:508 , ASP S:510 , HOH S:1102 , HOH S:1107 , HOH S:1108 , HOH S:1110
binding site for residue MG S 1001
06
AE2
SOFTWARE
HOH V:2207 , MFX W:2101 , HOH W:2201 , HOH W:2208 , HOH W:2209
binding site for residue MG T 4501
07
AE3
SOFTWARE
TYR T:322 , LYS T:323 , THR T:325 , GLN T:328
binding site for residue MG T 4502
08
AE4
SOFTWARE
ASP T:148 , GLY T:152 , ASN T:153 , GLU T:154 , ARG T:155
binding site for residue GOL T 4503
09
AE5
SOFTWARE
ASP U:508 , ASP U:510 , HOH U:1102 , HOH U:1103 , HOH U:1104 , HOH U:1105
binding site for residue MG U 1001
10
AE6
SOFTWARE
SER R:84 , MG R:4301 , GLU S:477 , ARG T:122 , DC V:2012 , DA V:2013 , HOH V:2201 , HOH V:2204 , HOH V:2206 , DT W:8 , DG W:2009
binding site for residue MFX V 2101
11
AE7
SOFTWARE
ARG R:122 , PTR R:123 , SER T:84 , MG T:4501 , ASP U:437 , GLU U:477 , DT V:8 , DG V:2009 , DC W:2012 , DA W:2013 , HOH W:2201 , HOH W:2208 , HOH W:2209
binding site for residue MFX W 2101
12
AE8
SOFTWARE
MFX W:2103 , HOH W:2202 , HOH W:2206
binding site for residue MG W 2102
13
AE9
SOFTWARE
DT V:2019 , DG W:1 , DA W:2 , MG W:2102 , HOH W:2202 , HOH W:2206
binding site for residue MFX W 2103
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (992 KB)
Header - Asym.Unit
Biol.Unit 1 (492 KB)
Header - Biol.Unit 1
Biol.Unit 2 (492 KB)
Header - Biol.Unit 2
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