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5CDQ
Biol. Unit 1
Info
Asym.Unit (992 KB)
Biol.Unit 1 (492 KB)
Biol.Unit 2 (492 KB)
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(1)
Title
:
2.95A STRUCTURE OF MOXIFLOXACIN WITH S.AUREUS DNA GYRASE AND DNA
Authors
:
B. D. Bax, V. Srikannathasan, P. F. Chan
Date
:
04 Jul 15 (Deposition) - 16 Dec 15 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: R,S,T,U,V,W (1x)
Keywords
:
Type Iia Topoisomerase, Antibacterial, Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. F. Chan, V. Srikannathasan, J. Huang, H. Cui, A. P. Fosberry, M. Gu, M. M. Hann, M. Hibbs, P. Homes, K. Ingraham, J. Pizzollo, C. Shen, A. J. Shillings, C. E. Spitzfaden, R. Tanner, A. J. Theobald, R. A. Stavenger, B. D. Bax, M. N. Gwynn
Structural Basis Of Dna Gyrase Inhibition By Antibacterial Qpt-1, Anticancer Drug Etoposide And Moxifloxacin.
Nat Commun V. 6 10048 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXa)
2b: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXb)
2c: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXc)
2d: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXd)
2e: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXe)
2f: 1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7... (MFXf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
4a: O-PHOSPHOTYROSINE (PTRa)
4b: O-PHOSPHOTYROSINE (PTRb)
4c: O-PHOSPHOTYROSINE (PTRc)
4d: O-PHOSPHOTYROSINE (PTRd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MFX
3
Ligand/Ion
1-CYCLOPROPYL-6-FLUORO-8-METHOXY-7-[(4AS,7AS)-OCTAHYDRO-6H-PYRROLO[3,4-B]PYRIDIN-6-YL]-4-OXO-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
PTR
2
Mod. Amino Acid
O-PHOSPHOTYROSINE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MFX E:2101 , HOH E:2201 , HOH E:2211 , HOH E:2213 , HOH F:2214
binding site for residue MG A 501
02
AC2
SOFTWARE
TYR A:322 , LYS A:323 , THR A:325 , GLN A:328
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:148 , GLY A:152 , ASN A:153 , GLU A:154 , ARG A:155
binding site for residue GOL A 503
04
AC4
SOFTWARE
ARG A:385 , LEU A:388 , ASP A:389 , ARG A:438 , GLU A:442
binding site for residue GOL A 504
05
AC5
SOFTWARE
ASP B:508 , ASP B:510 , HOH B:1107 , HOH B:1111 , HOH B:1116
binding site for residue MG B 1001
06
AC6
SOFTWARE
HOH E:2214 , MFX F:2101 , HOH F:2201 , HOH F:2208 , HOH F:2213
binding site for residue MG C 501
07
AC7
SOFTWARE
TYR C:322 , LYS C:323 , THR C:325 , GLN C:328
binding site for residue MG C 502
08
AC8
SOFTWARE
ASP C:148 , GLY C:152 , ASN C:153 , GLU C:154 , ARG C:155
binding site for residue GOL C 503
09
AC9
SOFTWARE
ARG C:377 , LEU C:384 , ALA C:424 , ARG C:432
binding site for residue GOL C 504
10
AD1
SOFTWARE
ASP D:508 , ASP D:510 , HOH D:1101 , HOH D:1102 , HOH D:1103 , HOH D:1104
binding site for residue MG D 1001
11
AD2
SOFTWARE
SER A:84 , MG A:501 , GLY B:459 , GLU B:477 , ARG C:122 , DC E:2012 , DA E:2013 , HOH E:2201 , HOH E:2211 , HOH E:2213 , DT F:8 , DG F:2009 , HOH F:2214
binding site for residue MFX E 2101
12
AD3
SOFTWARE
ARG A:122 , PTR A:123 , SER C:84 , MG C:501 , ASP D:437 , ARG D:458 , DT E:8 , DG E:2009 , DC F:2012 , DA F:2013 , HOH F:2201 , HOH F:2208 , HOH F:2213
binding site for residue MFX F 2101
13
AD4
SOFTWARE
MFX F:2103 , HOH F:2207 , HOH F:2212
binding site for residue MG F 2102
14
AD5
SOFTWARE
DT E:2019 , DG F:1 , DA F:2 , MG F:2102 , HOH F:2207 , HOH F:2212
binding site for residue MFX F 2103
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (992 KB)
Header - Asym.Unit
Biol.Unit 1 (492 KB)
Header - Biol.Unit 1
Biol.Unit 2 (492 KB)
Header - Biol.Unit 2
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