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(-) Description

Title :  1.98A STRUCTURE OF THIOPHENE1 WITH S.AUREUS DNA GYRASE AND DNA
 
Authors :  B. D. Bax, P. F. Chan, R. A. Stavenger
Date :  17 Apr 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  B,D,E,F,b,d,e,f
Biol. Unit 1:  B,D,E,F  (1x)
Biol. Unit 2:  b,d,e,f  (1x)
Keywords :  Type Iia Topoisomerase, Antibacterial, Inhibitor, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. F. Chan, T. Germe, B. D. Bax, J. Huang, R. K. Thalji, E. Bacque, A. Checchia, D. Chen, H. Cui, X. Ding, K. Ingraham, L. Mccloskey, K. Raha, V. Srikannathasan, A. Maxwell, R. A. Stavenger
Thiophene Antibacterials That Allosterically Stabilize Dna-Cleavage Complexes With Dna Gyrase.
Proc. Natl. Acad. Sci. V. 114 E4492 2017 U. S. A.
PubMed-ID: 28507124  |  Reference-DOI: 10.1073/PNAS.1700721114

(-) Compounds

Molecule 1 - DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT A
    Chains: B, D, b, d
    EC Number: 5.99.1.3, 5.99.1.3, 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GYRB, SA0005, GYRA, SA0006
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 158879
    Strain: N315
 
Molecule 2 - DNA (5'- D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3')
    Chains: E, F, e, f
    Engineered: YES
    Expression System: SYNTHETIC CONSTRUCT
    Expression System Taxid: 32630
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : BDEFbdef
Biological Unit 1 (1x): BDEF    
Biological Unit 2 (1x):     bdef

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 29)

Asymmetric Unit (7, 29)
No.NameCountTypeFull Name
194H6Ligand/Ion~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
29JN2Ligand/Ion~{N}-[(1~{S})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
3CL1Ligand/IonCHLORIDE ION
4GOL13Ligand/IonGLYCEROL
5MN5Ligand/IonMANGANESE (II) ION
6NA1Ligand/IonSODIUM ION
7SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
194H3Ligand/Ion~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
29JN-1Ligand/Ion~{N}-[(1~{S})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
3CL-1Ligand/IonCHLORIDE ION
4GOL7Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
6NA-1Ligand/IonSODIUM ION
7SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
194H3Ligand/Ion~{N}-[(1~{R})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
29JN2Ligand/Ion~{N}-[(1~{S})-2-AZANYL-1-PHENYL-ETHYL]-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-YL)THIOPHENE-2-CARBOXAMIDE
3CL-1Ligand/IonCHLORIDE ION
4GOL6Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
6NA-1Ligand/IonSODIUM ION
7SO41Ligand/IonSULFATE ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:508 , ASP B:510 , HOH B:1724 , HOH B:1840 , HOH B:1990 , HOH E:132binding site for residue MN B 1501
02AC2SOFTWAREARG B:630 , GLU B:634 , ALA B:637 , MET B:1027 , MET B:1179 , ARG B:1342 , PRO B:1343 , HOH B:1683 , HOH B:1926 , HOH B:1952 , HOH B:1970 , HOH B:2016 , HOH D:1611binding site for residue 94H B 1502
03AC3SOFTWAREARG B:458 , HOH B:1602 , HOH B:1870 , DG E:-1binding site for residue GOL B 1503
04AC4SOFTWAREGLY B:446 , ARG B:447 , TRP B:592 , HOH B:1613 , HOH B:1978binding site for residue GOL B 1504
05AC5SOFTWAREMET B:1113 , GLY B:1115 , GLN B:1267 , VAL B:1268 , DC E:-5 , HOH E:143binding site for residue GOL B 1505
06AC6SOFTWAREILE B:1386 , ASP B:1389 , HIS B:1390 , GLU B:1393 , ARG B:1414 , ARG b:468 , DA e:-8 , 9JN e:101 , DT f:12binding site for residue 94H B 1506
07AC7SOFTWAREASP D:508 , ASP D:510 , HOH D:1632 , HOH D:1961 , HOH D:1968 , HOH F:106binding site for residue MN D 1501
08AC8SOFTWARESER D:445 , GLY D:446 , ASP D:589 , TRP D:592 , HOH D:1636 , HOH D:2005binding site for residue GOL D 1502
09AC9SOFTWAREARG D:630 , GLU D:634 , ALA D:637 , MET D:1027 , MET D:1179 , ARG D:1342 , PRO D:1343 , HOH D:1656binding site for residue 94H D 1503
10AD1SOFTWARELYS B:1066 , ARG B:1122 , HOH B:1781 , PRO D:1080 , HIS D:1081 , GLY D:1082 , HOH D:1658 , HOH D:1680 , HOH D:1916binding site for residue GOL D 1504
11AD2SOFTWAREPRO D:1044 , ARG D:1047 , PRO D:1157 , HOH D:1775 , HOH D:1783 , HOH D:1867 , HOH D:1937binding site for residue GOL D 1505
12AD3SOFTWARETYR D:1051 , GLU D:1055 , TYR D:1078 , GLU D:1154 , ARG D:1155 , HOH D:1606 , HOH D:1794binding site for residue GOL D 1506
13AD4SOFTWAREHIS D:1390 , HOH D:2114 , DA f:-8 , HOH f:110binding site for residue CL D 1507
14AD5SOFTWAREASP b:508 , ASP b:510 , HOH b:1641 , HOH b:1935 , HOH b:1962 , HOH e:224binding site for residue MN b 1501
15AD6SOFTWAREARG b:630 , GLU b:634 , ALA b:637 , MET b:1027 , MET b:1179 , ARG b:1342 , PRO b:1343 , HOH b:1802 , HOH b:1845 , HOH b:1903 , HOH b:1986 , HOH b:2017 , GLU d:1235 , HOH d:1609binding site for residue 94H b 1502
16AD7SOFTWAREMET b:1075 , PRO b:1080 , HIS b:1081 , HOH b:1653 , HOH b:1697 , HOH b:1772 , HOH b:1841 , ARG d:1122 , PHE d:1123binding site for residue GOL b 1503
17AD8SOFTWAREPRO b:1044 , ARG b:1047 , HOH b:1634 , HOH b:1656 , HOH b:1666 , HOH b:1758 , HOH b:1820binding site for residue GOL b 1504
18AD9SOFTWAREARG b:1122 , PHE b:1123 , HOH b:1655 , HOH b:1660 , HOH b:1706 , MET d:1075 , PRO d:1080 , HIS d:1081binding site for residue GOL b 1505
19AE1SOFTWAREARG b:1429 , HOH b:1627 , HOH b:1973 , ARG d:1429 , ARG d:1432binding site for residue SO4 b 1506
20AE2SOFTWARETYR b:1322 , LYS b:1323 , THR b:1325 , GLN b:1328 , HOH b:1991 , HOH b:2074binding site for residue NA b 1507
21AE3SOFTWAREARG B:468 , HOH B:2073 , DA E:-8 , DT F:12 , ARG b:1385 , ILE b:1386 , ASP b:1389 , HIS b:1390 , GLU b:1393 , ARG b:1414 , LYS b:1416 , 94H b:1509binding site for residue 9JN b 1508
22AE4SOFTWAREARG B:468 , HOH B:2073 , DA E:-8 , DT F:12 , ILE b:1386 , ASP b:1389 , HIS b:1390 , GLU b:1393 , ARG b:1414 , PHE b:1415 , LYS b:1416 , 9JN b:1508 , HOH b:1718binding site for residue 94H b 1509
23AE5SOFTWAREASP d:508 , ASP d:510 , HOH d:1649 , HOH d:1843 , HOH d:1879 , HOH f:131binding site for residue MN d 1501
24AE6SOFTWAREARG d:630 , ILE d:633 , GLU d:634 , ALA d:637 , MET d:1027 , MET d:1179 , ARG d:1342 , PRO d:1343 , HOH d:1840binding site for residue 94H d 1502
25AE7SOFTWAREGLY d:446 , ARG d:447 , ASP d:589 , HOH d:1607binding site for residue GOL d 1503
26AE8SOFTWAREPRO d:1044 , ARG d:1047 , ARG d:1048 , GLU d:1156 , HOH d:1601 , HOH d:1653 , HOH d:1676binding site for residue GOL d 1504
27AE9SOFTWAREDA F:-8 , HIS d:1390binding site for residue MN d 1505
28AF1SOFTWAREARG B:1385 , ILE B:1386 , ASP B:1389 , HIS B:1390 , GLU B:1393 , ARG B:1414 , 94H B:1506 , HOH B:1852 , ARG b:468 , DA e:-8 , DT f:12binding site for residue 9JN e 101
29AF2SOFTWAREARG b:458 , GLY b:459 , DG e:-1 , DG e:1 , DT e:2 , HOH e:203 , HOH e:222 , DA f:3 , DC f:4binding site for residue GOL e 102
30AF3SOFTWAREGLU b:1393 , THR b:1397 , GLU b:1409 , SER b:1410 , LEU b:1411 , GLN b:1412 , PHE b:1415 , LYS b:1416 , 9JN b:1508 , 94H b:1509 , HOH b:1741 , HOH b:2094binding site for Di-peptide GLN b 1413 and ARG b 1414
31AF4SOFTWAREGLU b:1393 , THR b:1397 , GLU b:1409 , SER b:1410 , LEU b:1411 , GLN b:1412 , PHE b:1415 , LYS b:1416 , 9JN b:1508 , 94H b:1509 , HOH b:1741 , HOH b:2094binding site for Di-peptide GLN b 1413 and ARG b 1414

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NPK)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly D:490 -Gly D:491
2Gly D:1253 -Gly D:1254
3Leu d:1490 -Gly d:1491

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NPK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NPK)

(-) Exons   (0, 0)

(no "Exon" information available for 5NPK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhh....hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeeeehhheeeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5npk B  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANNERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG 1491
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630       640||    1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248      1258      1268      1278      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398      1408      1418      1428      1438      1448      1458      1468      1478      1488   
                                                                                                                                                          545|                                                          641|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                           580                                                          1010                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:674
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh.......hhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhh....hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5npk D  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLNERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG 1491
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630       640 ||   1017      1027      1037      1047      1057      1067      1077      1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487    
                                                                                                                                                          545|                                                           642|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                           580                                                           1010                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain E from PDB  Type:DNA  Length:17
                                                  
                5npk E   -8 AGCCGTAGCCTACGGCT   12
                                   ||5       
                                  -1|        
                                    4        


Chain F from PDB  Type:DNA  Length:16
                                                 
                5npk F   -8 AGCCGTAGCTACGGCT   12
                                   ||6      
                                  -1|       
                                    5       


Chain b from PDB  Type:PROTEIN  Length:675
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhh..........eeee.................eeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5npk b  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL 1490
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630       640 ||   1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325      1335      1345      1355      1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485     
                                                                                                                                                          545|                                                           642|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                                                                                                                                                           580                                                           1008                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain d from PDB  Type:PROTEIN  Length:672
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee.................eeeehhhhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhh....hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeeee.....eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5npk d  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLG 1491
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630       640|     1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399      1409      1419      1429      1439      1449      1459      1469      1479      1489  
                                                                                                                                                          545|                                                         640|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                           580                                                         1010                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain e from PDB  Type:DNA  Length:20
                                                     
                5npk e   -8 AGCCGTAGGTACCTACGGCT   12
                                   ||2        12
                                  -1|           
                                    1           


Chain f from PDB  Type:DNA  Length:20
                                                     
                5npk f   -8 AGCCGTAGGTACCTACGGCT   12
                                   ||2        12
                                  -1|           
                                    1
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 Related Entries

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        GYRA_STAAN | Q99XG5: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdo 5cdp 5cdq 5cdr 5iwi 5iwm 5npp
        GYRB_STAAN | P66937: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdo 5cdp 5cdq 5cdr 5iwi 5iwm 5npp

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