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(-) Description

Title :  3.15A STRUCTURE OF QPT-1 WITH S.AUREUS DNA GYRASE AND DNA
 
Authors :  B. D. Bax, V. Srikannathasan, P. F. Chan
Date :  04 Jul 15  (Deposition) - 16 Dec 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A,B,C,D,E,F,R,S,T,U,V,W
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  R,S,T,U,V,W  (1x)
Keywords :  Type Iia Topoisomerase, Antibacterial, Inhibitor, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. F. Chan, V. Srikannathasan, J. Huang, H. Cui, A. P. Fosberry, M. Gu, M. M. Hann, M. Hibbs, P. Homes, K. Ingraham, J. Pizzollo, C. Shen, A. J. Shillings, C. E. Spitzfaden, R. Tanner, A. J. Theobald, R. A. Stavenger, B. D. Bax, M. N. Gwynn
Structural Basis Of Dna Gyrase Inhibition By Antibacterial Qpt-1, Anticancer Drug Etoposide And Moxifloxacin.
Nat Commun V. 6 10048 2015
PubMed-ID: 26640131  |  Reference-DOI: 10.1038/NCOMMS10048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA GYRASE SUBUNIT A
    Chains: A, C, R, T
    EC Number: 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GYRA, SA0006
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN N315)
    Organism Taxid: 158879
    Strain: N315
 
Molecule 2 - DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B
    Chains: B, D, S, U
    EC Number: 5.99.1.3, 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 417-638,RESIDUES 417-638
    Gene: GYRB, SA0005
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN N315)
    Organism Taxid: 158879
    Strain: N315
 
Molecule 3 - DNA (5'- D(P*GP*AP*GP*CP*GP*TP*AP*C*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3')
    Chains: E, F, V, W
    Engineered: YES
    Expression System: SYNTHETIC CONSTRUCT
    Expression System Taxid: 32630
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFRSTUVW
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       RSTUVW

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 25)

Asymmetric Unit (8, 25)
No.NameCountTypeFull Name
150M1Ligand/Ion(2R,4S,4AS,5R)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
253L1Ligand/Ion(2R,4S,4AS,5S)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
353M2Ligand/Ion(2R,4S,4AS)-4',6'-DIHYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDIN]-2'-ONE
4GOL5Ligand/IonGLYCEROL
5MN4Ligand/IonMANGANESE (II) ION
6NA5Ligand/IonSODIUM ION
7PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
8SO43Ligand/IonSULFATE ION
Biological Unit 1 (5, 8)
No.NameCountTypeFull Name
150M-1Ligand/Ion(2R,4S,4AS,5R)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
253L1Ligand/Ion(2R,4S,4AS,5S)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
353M1Ligand/Ion(2R,4S,4AS)-4',6'-DIHYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDIN]-2'-ONE
4GOL3Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
6NA-1Ligand/IonSODIUM ION
7PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
8SO41Ligand/IonSULFATE ION
Biological Unit 2 (5, 8)
No.NameCountTypeFull Name
150M1Ligand/Ion(2R,4S,4AS,5R)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
253L-1Ligand/Ion(2R,4S,4AS,5S)-6'-HYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDINE]-2',4'(3'H)-DIONE
353M1Ligand/Ion(2R,4S,4AS)-4',6'-DIHYDROXY-2,4-DIMETHYL-8-NITRO-1,2,4,4A-TETRAHYDRO-2'H,6H-SPIRO[1,4-OXAZINO[4,3-A]QUINOLINE-5,5'-PYRIMIDIN]-2'-ONE
4GOL2Ligand/IonGLYCEROL
5MN-1Ligand/IonMANGANESE (II) ION
6NA-1Ligand/IonSODIUM ION
7PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
8SO42Ligand/IonSULFATE ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:429 , ARG C:429binding site for residue SO4 A 501
02AC2SOFTWARETYR A:322 , LYS A:323 , THR A:325 , GLN A:328binding site for residue NA A 502
03AC3SOFTWAREARG A:47 , ARG A:48 , GLU A:156 , PRO A:157binding site for residue GOL A 503
04AC4SOFTWAREASP B:508 , ASP B:510 , HOH B:801 , HOH B:802 , HOH B:805 , HOH E:2202binding site for residue MN B 701
05AC5SOFTWAREGLY C:152 , ASN C:153 , GLU C:154binding site for residue NA C 501
06AC6SOFTWARETYR C:322 , LYS C:323 , THR C:325 , GLN C:328binding site for residue NA C 502
07AC7SOFTWAREASP D:508 , ASP D:510 , HOH D:1101 , HOH D:1102 , HOH D:1103 , HOH D:1104binding site for residue MN D 1001
08AC8SOFTWAREASN D:474 , ASN D:475 , ASN D:476 , DG E:2013binding site for residue GOL D 1002
09AC9SOFTWARESER A:297 , SER D:445 , GLY D:446binding site for residue GOL D 1003
10AD1SOFTWAREGLY B:436 , ASP B:437 , ARG B:458 , PTR C:123 , DC E:8 , DG E:2009 , DC F:2012 , DG F:2013binding site for residue 53M E 2101
11AD2SOFTWAREPTR A:123 , GLY D:436 , ASP D:437 , ARG D:458 , GLY D:459 , DC E:2012 , DG E:2013 , DC F:8 , DG F:2009 , HOH F:2202binding site for residue 53L F 2101
12AD3SOFTWARETYR R:322 , THR R:325 , GLN R:328binding site for residue NA R 501
13AD4SOFTWAREASP S:508 , ASP S:510 , HOH S:6103 , HOH S:6104 , HOH S:6106 , HOH S:6107binding site for residue MN S 6001
14AD5SOFTWAREGLY S:436 , ASP S:437 , ARG S:458 , GLY S:459 , HOH S:6102 , PTR T:123 , DC V:2012 , DG V:2013 , DC W:8 , DG W:2009binding site for residue 50M S 6002
15AD6SOFTWAREARG R:429 , ARG T:429 , ARG T:432binding site for residue SO4 T 501
16AD7SOFTWAREPRO T:44 , ARG T:47 , GLU T:156 , PRO T:157 , SER T:158binding site for residue SO4 T 502
17AD8SOFTWARETYR T:322 , THR T:325 , GLN T:328 , HOH T:615binding site for residue NA T 503
18AD9SOFTWAREASP U:508 , ASP U:510 , HOH U:5101 , HOH U:5102 , HOH U:5107 , HOH V:2102binding site for residue MN U 5001
19AE1SOFTWAREASN U:476 , DG W:2013binding site for residue GOL U 5002
20AE2SOFTWAREGLY U:446 , ARG U:447 , TRP U:592binding site for residue GOL U 5003
21AE3SOFTWAREGLY U:436 , ASP U:437 , ARG U:458 , GLY U:459 , DC V:8 , DG V:2009 , DC W:2012 , DG W:2013binding site for residue 53M W 2101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CDO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CDO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CDO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CDO)

(-) Exons   (0, 0)

(no "Exon" information available for 5CDO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhh..........eeeee...........hhh.eeeee..hhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhhhhh.........eee.hhhhhhhhhhheeeeeee.eeeee......eeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo A    9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    18        28        38        48        58        68        78        88        98       108       118    |  128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488  
                                                                                                                                            123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eee.............hhhhhhhhhh.......eeee..hhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo B  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV  638
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630        
                                                                                                                                                          545|                                                          
                                                                                                                                                           580                                                          


Chain C from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhhh........eeee............hhhh.eeee.hhhhhhhh........eee......eee.......hhhhhhheeee....eeee...hhhhhhhhhhhhhhh...hhhhhh...........eeee.hhhhhhhhhhheeeeeee.eeeeeee...eeeeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5cdo C   11 ERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    20        30        40        50        60        70        80        90       100       110       120  |    130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
                                                                                                                                          123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhh.hhhhhhhhhhhh..hhhhhhhhhh....eeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eee.............hhhhhhhhhh.......eeee..hhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo D  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV  638
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630        
                                                                                                                                                          545|                                                          
                                                                                                                                                           580                                                          


Chain E from PDB  Type:DNA  Length:20
                                                     
                5cdo E    1 GAGCGTACGGCCGTACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain F from PDB  Type:DNA  Length:20
                                                     
                5cdo F    1 GAGCGTACGGCCGTACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain R from PDB  Type:PROTEIN  Length:477
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhh.........eeee............hhhh.eeee...hhhhhh........eee......eee.......hhhhhh.eeee....eeee...hhhhhhhhhhhhhhh...hhhhhhhhh.........eee.hhhhhhhhhhheeeeeee.eeeee...eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh..eeeeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo R   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249  ||   263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       
                                                                                                                                           123-PTR                                                                                                                          252|                                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                             257                                                                                                                                                                                                                                         


Chain S from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeee.hhhhhhhhhhhh....eee.............hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo S  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAV  638
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630        
                                                                                                                                                          545|                                                          
                                                                                                                                                           580                                                          


Chain T from PDB  Type:PROTEIN  Length:481
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhh..........eeee............hhhh.eeeehhhhhh...........eee......eee.......hhhhhh.eeee....eeee...hhhhhhhhhhhhhhh...hhhhhh............eee.hhhhhhhhhhheeeeeee.eeeee.......eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.........eeeee....hhhhhhhhhhhhh....eeeee.eeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo T   10 NERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRyTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQL  490
                                    19        29        39        49        59        69        79        89        99       109       119   |   129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489 
                                                                                                                                           123-PTR                                                                                                                                                                                                                                                                                                                                                                           


Chain U from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhh.eeeeeehhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhhh.......hhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eee.............hhhhhhhhhh.......eeee..hhhhhhhhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cdo U  417 KLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPTGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNA  637
                                   426       436       446       456       466       476       486       496       506       516       526       536       580       590       600       610       620       630       
                                                                                                                                                          545|                                                         
                                                                                                                                                           580                                                         


Chain V from PDB  Type:DNA  Length:20
                                                     
                5cdo V    1 GAGCGTACGGCCGTACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009           


Chain W from PDB  Type:DNA  Length:20
                                                     
                5cdo W    1 GAGCGTACGGCCGTACGCTT 2020
                                  2010      2020
                                   8|           
                                 2009
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(-) Gene Ontology  (14, 24)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GYRA_STAAN | Q99XG5: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdp 5cdq 5cdr 5iwi 5iwm 5npk 5npp
        GYRB_STAAN | P66937: 2xco 2xcq 2xcr 2xcs 2xct 4bul 5cdm 5cdn 5cdp 5cdq 5cdr 5iwi 5iwm 5npk 5npp

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