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(-) Description

Title :  STRUCTURAL CHARACTERIZATION OF A NEWLY IDENTIFIED COMPONENT OF ALPHA-CARBOXYSOMES: THE AAA+ DOMAIN PROTEIN CSO-CBBQ
 
Authors :  M. Sutter, C. A. Kerfeld
Date :  17 Jun 15  (Deposition) - 18 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Atpase, Aaa+ Domain Protein, Carboxysome-Associated, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sutter, E. W. Roberts, R. C. Gonzalez, C. Bates, S. Dawoud, K. Landry G. C. Cannon, S. Heinhorst, C. A. Kerfeld
Structural Characterization Of A Newly Identified Component Of Alpha-Carboxysomes: The Aaa+ Domain Protein Csocbbq.
Sci Rep V. 5 16243 2015
PubMed-ID: 26538283  |  Reference-DOI: 10.1038/SREP16243

(-) Compounds

Molecule 1 - CBBQ/NIRQ/NORQ DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: HNEAP_0905
    Organism Scientific: HALOTHIOBACILLUS NEAPOLITANUS (STRAIN ATCC 23641 / C2)
    Organism Taxid: 555778
    Strain: ATCC 23641 / C2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1ADP6Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:15 , TYR A:16 , ARG A:17 , GLY A:43 , CYS A:44 , GLY A:45 , LYS A:46 , SER A:47 , ARG A:48 , ILE A:185 , GLU A:189 , ARG A:222binding site for residue ADP A 301
2AC2SOFTWARETYR B:15 , TYR B:16 , ARG B:17 , THR B:42 , GLY B:43 , CYS B:44 , GLY B:45 , LYS B:46 , SER B:47 , ARG B:48 , ILE B:185 , GLU B:189 , ARG B:222binding site for residue ADP B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C3C)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:151 -Pro A:152

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C3C)

(-) Exons   (0, 0)

(no "Exon" information available for 5C3C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh...eeeee......hhhhhh..hhhhhhhhh..eeeee.........hhhhhhhh....eee......eee.....eeeeee....hhhhhh..eeee....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhh......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3c A  11 RKEPYYRAVQDEIELYRAGYEARIPMMLKGPTGCGKSRFVEHMAWKLNRPLITIACNEDMTASDLVGRDGPLTVAARIGAICYLDEIVEARQDTIVVIHPLTDHRRVLPLEKKGELVEAHPDFQIVISYNPDLKQSTKQRFGALDFDYPKPDIEAEIVSHEAGVDKDTAEKLVQIAQKARNGLSTRLLVYAGKLIAKGVDARAACTMTLVNPITDDVDMRDALDTVVKTFF 267
                                    20        30        40        50        60        70       |91       101       111       121       131       141       151||     168       178       188       198       208||     226       236       246       256       266 
                                                                                              78|                                                           152|                                              209|                                                 
                                                                                               90                                                            160                                               218                                                 


Chain B from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh...eeeee.....hhhhhh.hhhhhhhhhh.eeeeehhhhhhhhhhh.hhhhh....eee......eee.....eeeeee...hhhhhh..eeee....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3c B  12 KEPYYRAVQDEIELYRAGYEARIPMMLKGPTGCGKSRFVEHMAWKLNRPLITIACNEDMTASDLVDGPLTVAARIGAICYLDEIVEARQDTIVVIHPLTDHRRVLPLEKKGELVEAHPDFQIVISYNDLKQSTKQRFGALDFDYPKPDIEAEIVSHEAGVDKDTAEKLVQIAQKARNLKGHGLDEGLSTRLLVYAGKLIAKGVDARAACTMTLVNPITDDVDMRDALDTVVKTFF 267
                                    21        31        41        51        61        71    ||  94       104       114       124       134       144      |162       172       182       192       202       212       222       232       242       252       262     
                                                                                           76|                                                          151|                                                                                                           
                                                                                            90                                                           160
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C3C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C3C)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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