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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CO-BOUND HUMAN HEAVY-CHAIN FERRITIN VARIANT 122H-DELTA C-STAR
 
Authors :  J. B. Bailey, L. Zhang, J. A. Chiong, F. A. Tezcan
Date :  16 May 17  (Deposition) - 21 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Oxidoreductase, Node, Maxi-Ferritin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bailey, L. Zhang, J. A. Chiong, S. Ahn, F. A. Tezcan
Synthetic Modularity Of Protein-Metal-Organic Frameworks.
J. Am. Chem. Soc. V. 139 8160 2017
PubMed-ID: 28590729  |  Reference-DOI: 10.1021/JACS.7B01202

(-) Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
    Chains: A
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FERRITIN H SUBUNIT,CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3CO5Ligand/IonCOBALT (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3CO-1Ligand/IonCOBALT (II) ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:122 , HOH A:440 , HOH A:554binding site for residue CO A 201
2AC2SOFTWAREGLU A:27 , GLU A:62 , HIS A:65 , HOH A:311 , HOH A:334binding site for residue CO A 202
3AC3SOFTWAREGLN A:58 , GLU A:62 , GLU A:107 , HOH A:305 , HOH A:438binding site for residue CO A 203
4AC4SOFTWAREHIS A:173 , CL A:206 , HOH A:448binding site for residue CO A 204
5AC5SOFTWAREARG A:9 , ASN A:11 , TYR A:12 , HOH A:516binding site for residue CO A 205
6AC6SOFTWAREHIS A:173 , CO A:204binding site for residue CL A 206
7AC7SOFTWAREASP A:131 , GLU A:134 , HOH A:365binding site for residue CA A 207
8AC8SOFTWAREHOH A:316 , HOH A:327 , HOH A:456 , HOH A:472binding site for residue CA A 208
9AC9SOFTWAREASP A:84 , GLN A:86 , HOH A:439binding site for residue CA A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5VTD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VTD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VTD)

(-) Exons   (0, 0)

(no "Exon" information available for 5VTD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vtd A   5 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIQKPDEDDWESGLNAMEAALHLEKNVNQSLLELHKLAHDKNDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VTD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VTD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VTD)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  1.16.3.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIH_HUMAN | P02794: 1fha 2cei 2chi 2cih 2clu 2cn6 2cn7 2fha 2iu2 2z6m 3ajo 3ajp 3ajq 3erz 3es3 4dyx 4dyy 4dyz 4dz0 4oyn 4y08 4ykh 4zjk 5cmq 5cmr 5gn8 5gou 5jkk 5jkl 5jkm 5up7 5up8

(-) Related Entries Specified in the PDB File

5cmq 5CMQ CONTAINS THE SAME PROTEIN COMPLEXED WITH ZINC.
5cmr 5CMR CONTAINS A SIMILAR PROTEIN COMPLEXED WITH ZINC AND P-BDH, FORMING A PROTEIN-MOF.
5up7 5UP7 CONTAINS A SIMILAR PROTEIN COMPLEXED WITH NICKEL.
5up8 5UP8 CONTAINS THE SAME PROTEIN COMPLEXED WITH ZINC AND P-BDH, FORMING A PROTEIN-MOF.
5up9 5UP9 CONTAINS A SIMILAR PROTEIN COMPLEXED WITH ZINC AND P-XDH, FORMING A PROTEIN-MOF.