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(-) Description

Title :  FIFTEEN MINUTES IRON LOADED HUMAN H FERRITIN
 
Authors :  C. Pozzi, F. Di Pisa, S. Mangani
Date :  12 Feb 14  (Deposition) - 09 Sep 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Oxidoreductase, Ferroxidase, Iron Loaded, Human H Ferritin, Iron Storage Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Pozzi, F. Di Pisa, C. Bernacchioni, S. Ciambellotti, P. Turano, S. Mangani
Iron Binding To Human Heavy-Chain Ferritin.
Acta Crystallogr. , Sect. D V. 71 1909 2015
PubMed-ID: 26327381  |  Reference-DOI: 10.1107/S1399004715013073

(-) Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
    ChainsA
    EC Number1.16.3.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    GeneFTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFERRITIN H SUBUNIT, CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (24x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 25)

Asymmetric Unit (5, 25)
No.NameCountTypeFull Name
1BCN1Ligand/IonBICINE
2CL13Ligand/IonCHLORIDE ION
3FE7Ligand/IonFE (III) ION
4MG3Ligand/IonMAGNESIUM ION
5TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 48)
No.NameCountTypeFull Name
1BCN24Ligand/IonBICINE
2CL-1Ligand/IonCHLORIDE ION
3FE-1Ligand/IonFE (III) ION
4MG-1Ligand/IonMAGNESIUM ION
5TRS24Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:128 , ASP A:131 , PHE A:132 , THR A:135 , HIS A:136 , ASN A:139 , CL A:218 , MG A:223 , HOH A:304 , HOH A:309 , HOH A:335 , HOH A:357 , HOH A:366 , HOH A:542binding site for residue TRS A 201
02AC2SOFTWARELEU A:28 , SER A:31 , TYR A:32 , LEU A:35 , ARG A:63 , ILE A:85binding site for residue BCN A 202
03AC3SOFTWAREGLU A:27 , GLU A:62 , HIS A:65 , FE A:204 , HOH A:445 , HOH A:601 , HOH A:611binding site for residue FE A 203
04AC4SOFTWAREGLU A:62 , GLU A:107 , GLN A:141 , FE A:203 , HOH A:445 , HOH A:489 , HOH A:611binding site for residue FE A 204
05AC5SOFTWAREGLN A:58 , GLU A:61 , HOH A:494 , HOH A:599 , HOH A:605 , HOH A:613binding site for residue FE A 205
06AC6SOFTWAREHIS A:57 , GLU A:61 , HOH A:597 , HOH A:603 , HOH A:606 , HOH A:612binding site for residue FE A 206
07AC7SOFTWAREHIS A:173 , CL A:210 , HOH A:386binding site for residue FE A 207
08AC8SOFTWAREHOH A:319 , HOH A:405binding site for residue FE A 208
09AC9SOFTWAREASP A:131 , HOH A:315 , HOH A:324binding site for residue FE A 209
10AD1SOFTWAREHIS A:173 , FE A:207binding site for residue CL A 210
11AD2SOFTWAREHIS A:13 , GLN A:14binding site for residue CL A 211
12AD3SOFTWAREGLN A:83 , ASP A:84 , LYS A:86 , CL A:221 , HOH A:420binding site for residue CL A 212
13AD4SOFTWAREASN A:125 , HOH A:314 , HOH A:352 , HOH A:425binding site for residue CL A 213
14AD5SOFTWAREASN A:21 , HOH A:471 , HOH A:518binding site for residue CL A 214
15AD6SOFTWAREARG A:9 , ASN A:11 , TYR A:12binding site for residue CL A 215
16AD7SOFTWAREGLN A:75 , HOH A:332 , HOH A:383 , HOH A:584binding site for residue CL A 216
17AD8SOFTWAREASP A:150 , HIS A:151 , ASN A:154 , HOH A:308 , HOH A:432binding site for residue CL A 217
18AD9SOFTWAREGLN A:75 , ASN A:139 , TRS A:201binding site for residue CL A 218
19AE1SOFTWAREASN A:11binding site for residue CL A 219
20AE2SOFTWAREGLU A:134 , THR A:135 , HIS A:136 , TYR A:137 , ASN A:139 , GLU A:140binding site for residue CL A 220
21AE3SOFTWARELYS A:86 , CL A:212 , HOH A:343binding site for residue CL A 221
22AE4SOFTWAREASN A:25 , HOH A:563 , HOH A:564 , HOH A:602binding site for residue CL A 222
23AE5SOFTWARETRS A:201 , HOH A:335 , HOH A:357 , HOH A:366 , HOH A:370 , HOH A:553binding site for residue MG A 223
24AE6SOFTWAREHOH A:446 , HOH A:456 , HOH A:543 , HOH A:544 , HOH A:602 , HOH A:607binding site for residue MG A 224
25AE7SOFTWAREHOH A:305 , HOH A:313 , HOH A:420 , HOH A:437binding site for residue MG A 225

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OYN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OYN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OYN)

(-) Exons   (0, 0)

(no "Exon" information available for 4OYN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oyn A   5 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OYN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OYN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OYN)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIH_HUMAN | P027941fha 2cei 2chi 2cih 2clu 2cn6 2cn7 2fha 2iu2 2z6m 3ajo 3ajp 3ajq 3erz 3es3 4dyx 4dyy 4dyz 4dz0 4y08 4ykh 4zjk 5cmq 5cmr 5gn8 5gou 5jkk 5jkl 5jkm 5up7 5up8 5vtd

(-) Related Entries Specified in the PDB File

4p03