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(-) Description

Title :  CRYSTAL STRUCTURE OF ZN-BOUND HUMAN H-FERRITIN VARIANT 122H-DELTA C-STAR
 
Authors :  P. A. Sontz, J. B. Bailey, S. Ahn, F. A. Tezcan
Date :  17 Jul 15  (Deposition) - 09 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Protein Engineering, Metal Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. A. Sontz, J. B. Bailey, S. Ahn, F. A. Tezcan
A Metal Organic Framework With Spherical Protein Nodes: Rational Chemical Design Of 3D Protein Crystals.
J. Am. Chem. Soc. V. 137 11598 2015
PubMed-ID: 26305584  |  Reference-DOI: 10.1021/JACS.5B07463

(-) Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
    ChainsA
    EC Number1.16.3.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentFERRITIN-LIKE DIIRON DOMAIN CONTAINING RESIDUES 6-177
    GeneFTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFERRITIN H SUBUNIT,CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (24x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1ZN9Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:27 , GLU A:62 , HIS A:65 , ZN A:208 , HOH A:306 , HOH A:371binding site for residue ZN A 201
2AC2SOFTWAREHIS A:105 , HOH A:444binding site for residue ZN A 202
3AC3SOFTWAREHIS A:122 , HOH A:520binding site for residue ZN A 203
4AC4SOFTWAREASP A:131 , GLU A:134 , HOH A:308binding site for residue ZN A 204
5AC5SOFTWAREHIS A:173 , ZN A:206binding site for residue ZN A 205
6AC6SOFTWAREHIS A:173 , ZN A:205binding site for residue ZN A 206
7AC7SOFTWAREASP A:84 , GLN A:86 , HOH A:410binding site for residue ZN A 207
8AC8SOFTWAREGLU A:62 , GLU A:107 , GLN A:141 , ZN A:201 , ZN A:209 , HOH A:371 , HOH A:430binding site for residue ZN A 208
9AC9SOFTWAREGLN A:58 , GLU A:62 , GLU A:107 , ZN A:208 , HOH A:430 , HOH A:440binding site for residue ZN A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CMQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CMQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cmq A   5 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIQKPDEDDWESGLNAMEAALHLEKNVNQSLLELHKLAHDKNDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174  

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CMQ)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIH_HUMAN | P027941fha 2cei 2chi 2cih 2clu 2cn6 2cn7 2fha 2iu2 2z6m 3ajo 3ajp 3ajq 3erz 3es3 4dyx 4dyy 4dyz 4dz0 4oyn 4y08 4ykh 4zjk 5cmr 5gn8 5gou 5jkk 5jkl 5jkm 5up7 5up8 5vtd

(-) Related Entries Specified in the PDB File

5cmr