4YKH - JenaLib

Title :   THIRTY MINUTES IRON LOADED HUMAN H FERRITIN

Authors :   C. Pozzi, F. Di Pisa, S. Mangani

Date :   04 Mar 15 (Deposition) - 09 Sep 15 (Release) - 16 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.52

Chains :   Asym. Unit : A
Biol. Unit 1: A  (24x)

Keywords :   Oxidoreductase, Ferroxidase, Ferritin Heavy Chain, Iron Homeostasis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Pozzi, F. Di Pisa, C. Bernacchioni, S. Ciambellotti, P. Turano, S. Mangani
Iron Binding To Human Heavy-Chain Ferritin.
Acta Crystallogr. , Sect. D V. 71 1909 2015
PubMed-ID: 26327381 | Reference-DOI: 10.1107/S1399004715013073

Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
	Chains	:	A
	EC Number	:	1.16.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET9A
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	FTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FERRITIN H SUBUNIT,CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 24)

Sites (24, 24)

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:31 , TYR A:32 , ARG A:63 , ILE A:85	binding site for residue BCN A 201
02	AC2	SOFTWARE	GLU A:27 , GLU A:62 , HIS A:65 , FE2 A:205 , HOH A:474 , HOH A:610 , HOH A:616	binding site for residue FE2 A 202
03	AC3	SOFTWARE	HOH A:332 , HOH A:403	binding site for residue FE2 A 203
04	AC4	SOFTWARE	GLN A:58 , GLU A:61 , HOH A:589 , HOH A:606 , HOH A:613 , HOH A:617	binding site for residue FE2 A 204
05	AC5	SOFTWARE	GLU A:62 , GLU A:107 , GLN A:141 , FE2 A:202 , HOH A:474 , HOH A:610	binding site for residue FE2 A 205
06	AC6	SOFTWARE	HIS A:173 , CL A:214 , HOH A:386	binding site for residue FE2 A 206
07	AC7	SOFTWARE	ASP A:131 , HOH A:301 , HOH A:309	binding site for residue FE2 A 207
08	AC8	SOFTWARE	HIS A:57 , GLU A:61 , HOH A:544 , HOH A:592 , HOH A:595 , HOH A:619	binding site for residue FE2 A 208
09	AC9	SOFTWARE	HOH A:305 , HOH A:311 , HOH A:413 , HOH A:437	binding site for residue MG A 209
10	AD1	SOFTWARE	HOH A:345 , HOH A:349 , HOH A:355 , HOH A:376 , HOH A:422 , HOH A:438	binding site for residue MG A 210
11	AD2	SOFTWARE	HOH A:454 , HOH A:467 , HOH A:536 , HOH A:576 , HOH A:607 , HOH A:612	binding site for residue MG A 211
12	AD3	SOFTWARE	HOH A:466 , HOH A:516 , HOH A:517 , HOH A:525 , HOH A:583 , HOH A:618	binding site for residue MG A 212
13	AD4	SOFTWARE	GLN A:83 , ASP A:84 , LYS A:86 , CL A:223 , HOH A:413	binding site for residue CL A 213
14	AD5	SOFTWARE	HIS A:173 , FE2 A:206	binding site for residue CL A 214
15	AD6	SOFTWARE	HIS A:13 , GLN A:14 , HOH A:611	binding site for residue CL A 215
16	AD7	SOFTWARE	GLN A:75 , ASN A:139	binding site for residue CL A 216
17	AD8	SOFTWARE	ASN A:125 , HOH A:366 , HOH A:426	binding site for residue CL A 217
18	AD9	SOFTWARE	LYS A:124	binding site for residue CL A 218
19	AE1	SOFTWARE	ASP A:150 , HIS A:151 , ASN A:154 , HOH A:434	binding site for residue CL A 219
20	AE2	SOFTWARE	ASN A:25 , HOH A:527 , HOH A:570	binding site for residue CL A 220
21	AE3	SOFTWARE	ARG A:9 , ASN A:11 , TYR A:12 , HOH A:397	binding site for residue CL A 221
22	AE4	SOFTWARE	GLN A:75 , HOH A:333 , HOH A:390 , HOH A:394	binding site for residue CL A 222
23	AE5	SOFTWARE	LYS A:86 , CL A:213 , HOH A:343	binding site for residue CL A 223
24	AE6	SOFTWARE	HIS A:105 , LEU A:106 , ASN A:109 , HOH A:582	binding site for residue CL A 224

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ykh A   5 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG 176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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	Cis Peptide Bonds
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