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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ZN-BOUND HUMAN HEAVY-CHAIN VARIANT 122H-DELTA C-STAR WITH PARA-BENZENEDIHYDROXAMATE
 
Authors :  J. B. Bailey, L. Zhang, J. C. Chiong, S. Ahn, F. A. Tezcan
Date :  01 Feb 17  (Deposition) - 21 Jun 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.63
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Oxidoreductase, Self-Assembly, Protein-Mof, Protein-Metal-Organic Framework (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bailey, L. Zhang, J. A. Chiong, S. Ahn, F. A. Tezcan
Synthetic Modularity Of Protein-Metal-Organic Frameworks.
J. Am. Chem. Soc. V. 139 8160 2017
PubMed-ID: 28590729  |  Reference-DOI: 10.1021/JACS.7B01202

(-) Compounds

Molecule 1 - FERRITIN HEAVY CHAIN
    Chains: A
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FTH1, FTH, FTHL6, OK/SW-CL.84, PIG15
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FERRITIN H SUBUNIT,CELL PROLIFERATION-INDUCING GENE 15 PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1BYD1Ligand/IonN,N'-DIHYDROXYBENZENE-1,4-DICARBOXAMIDE
2NA1Ligand/IonSODIUM ION
3ZN3Ligand/IonZINC ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1BYD24Ligand/IonN,N'-DIHYDROXYBENZENE-1,4-DICARBOXAMIDE
2NA-1Ligand/IonSODIUM ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:27 , GLU A:62 , HIS A:65 , GLN A:141 , ZN A:202 , HOH A:302binding site for residue ZN A 201
2AC2SOFTWAREGLU A:62 , GLU A:107 , GLN A:141 , ZN A:201binding site for residue ZN A 202
3AC3SOFTWAREHIS A:122 , BYD A:205binding site for residue ZN A 203
4AC4SOFTWAREASP A:131 , GLU A:134binding site for residue NA A 204
5AC5SOFTWAREHIS A:122 , ZN A:203binding site for residue BYD A 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UP8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5UP8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5up8 A   4 STSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIQKPDEDDWESGLNAMEAALHLEKNVNQSLLELHKLAHDKNDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 179
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UP8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UP8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UP8)

(-) Gene Ontology  (17, 17)

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  FRIH_HUMAN | P02794
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  1.16.3.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRIH_HUMAN | P02794: 1fha 2cei 2chi 2cih 2clu 2cn6 2cn7 2fha 2iu2 2z6m 3ajo 3ajp 3ajq 3erz 3es3 4dyx 4dyy 4dyz 4dz0 4oyn 4y08 4ykh 4zjk 5cmq 5cmr 5gn8 5gou 5jkk 5jkl 5jkm 5up7 5vtd

(-) Related Entries Specified in the PDB File

5cmq 5CMQ CONTAINS AN IDENTICAL PROTEIN COMPLEXED WITH ZINC IN A FACE- CENTERED CUBIC LATTICE.
5cmr 5CMR CONTAINS A SIMILAR PROTEIN COMPLEXED WITH ZINC AND P-BDH, FORMING A SIMILAR PROTEIN-MOF.
5up7 5UP7 CONTAINS AN IDENTICAL PROTEIN COMPLEXED WITH NICKEL IN A FACE- CENTERED CUBIC LATTICE.
5up9 5UP9 CONTAINS A SIMILAR PROTEIN COMPLEXED WITH ZINC AND P-XDH, FORMING A DIFFERENT PROTEIN-MOF.