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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PARP14 BOUND TO 2-{[(1-METHYLPIPERIDIN-4-YL)METHYL]AMINO}-5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE INHIBITOR
 
Authors :  K. S. Saikatendu, M. Hirozane
Date :  20 Mar 17  (Deposition) - 10 May 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Human Parp14, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yoneyama-Hirozane, S. I. Matsumoto, Y. Toyoda, K. S. Saikatendu, Y. Zama, K. Yonemori, M. Oonishi, T. Ishii, T. Kawamoto
Identification Of Parp14 Inhibitors Using Novel Methods For Detecting Auto-Ribosylation.
Biochem. Biophys. Res. V. 486 626 2017 Commun.
PubMed-ID: 28315326  |  Reference-DOI: 10.1016/J.BBRC.2017.03.052

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 14
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 561
    Gene: PARP14, BAL2, KIAA1268
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-14,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 8, ARTD8,B AGGRESSIVE LYMPHOMA PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
191J2Ligand/Ion2-{[(1-METHYLPIPERIDIN-4-YL)METHYL]AMINO}-5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
191J1Ligand/Ion2-{[(1-METHYLPIPERIDIN-4-YL)METHYL]AMINO}-5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
191J1Ligand/Ion2-{[(1-METHYLPIPERIDIN-4-YL)METHYL]AMINO}-5,6,7,8-TETRAHYDRO[1]BENZOTHIENO[2,3-D]PYRIMIDIN-4(3H)-ONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1682 , GLY A:1683 , ASP A:1685 , TYR A:1714 , ALA A:1716 , SER A:1722 , THR A:1726 , TYR A:1727 , HOH A:2037binding site for residue 91J A 1901
2AC2SOFTWAREHIS B:1682 , GLY B:1683 , ASP B:1685 , TYR B:1701 , TYR B:1714 , ALA B:1716 , SER B:1722 , TYR B:1727 , HOH B:2011binding site for residue 91J B 1901

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:1618 -B:1618

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V7W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V7W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V7W)

(-) Exons   (0, 0)

(no "Exon" information available for 5V7W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh....eeee.hhhhhh............eeeeeeeee...ee...eee..eeeee..eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5v7w A 1614 QQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1623      1633      1643      1653      1663      1673      1683      1693     |1715      1725      1735      1745    ||1762      1772      1782      1792         
                                                                                                              1699|                                  1750|                                           
                                                                                                               1712                                   1758                                           


Chain B from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhh.......eeeeeeeehhhhhhhhhhhh........eeee.hhhhhh............eeeeeeeee...ee......eee..eeeee..eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5v7w B 1612 MKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1621      1631      1641      1651      1661      1671      1681      1691      1701 ||   1719      1729      1739      1749||    1763      1773      1783      1793        
                                                                                                                    1703|                                  1750|                                              
                                                                                                                     1712                                   1755
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V7W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V7W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V7W)

(-) Gene Ontology  (8, 8)

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  5v7w
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  PAR14_HUMAN | Q460N5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAR14_HUMAN | Q460N5: 3goy 3q6z 3q71 3se2 3smi 3smj 3vfq 4abk 4abl 4d86 4f1l 4f1q 4py4 5lxp 5lyh 5nqe 5v7t

(-) Related Entries Specified in the PDB File

5v7t