4F1L - JenaLib

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Biological Unit 6 (Jmol Viewer)

Title :   HUMAN ARTD8 (PARP14, BAL2) - CATALYTIC DOMAIN IN COMPLEX WITH INHIBITOR A16(Z)

Authors :   T. Karlberg, C. D. Andersson, A. Lindgren, S. Spjut, A. G. Thorsell, T. E J. Weigelt, M. Elofsson, A. Linusson, H. Schuler

Date :   07 May 12 (Deposition) - 05 Sep 12 (Release) - 26 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,D  (1x)
Biol. Unit 6: B,C  (1x)

Keywords :   Nad, Adp-Ribose, Parp14, Bal2, Artd8, Artd Transferase Domain, Adp- Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. D. Andersson, T. Karlberg, T. Ekblad, A. E. Lindgren, A. G. Thorsell S. Spjut, U. Uciechowska, M. S. Niemiec, P. Wittung-Stafshede, J. Weigelt, M. Elofsson, H. Schuler, A. Linusson
Discovery Of Ligands For Adp-Ribosyltransferases Via Docking-Based Virtual Screening.
J. Med. Chem. V. 55 7706 2012
PubMed-ID: 22823910 | Reference-DOI: 10.1021/JM300746D

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 14
	Chains	:	A, B, C, D
	EC Number	:	2.4.2.30
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)R3 PRARE
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	CATALYTIC DOMAIN
	Gene	:	BAL2, KIAA1268, PARP14
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PARP-14, B AGGRESSIVE LYMPHOMA PROTEIN 2

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A			D
Biological Unit 6 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	0RY	4	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	2	Ligand/Ion	NITRATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	0RY	1	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	1	Ligand/Ion	NITRATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	0RY	1	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	-1	Ligand/Ion	NITRATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	0RY	1	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	1	Ligand/Ion	NITRATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	0RY	1	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	-1	Ligand/Ion	NITRATE ION

Biological Unit 5 (2, 3)

No.	Name	Count	Type	Full Name
1	0RY	2	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	1	Ligand/Ion	NITRATE ION

Biological Unit 6 (2, 3)

No.	Name	Count	Type	Full Name
1	0RY	2	Ligand/Ion	(2Z)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2	NO3	1	Ligand/Ion	NITRATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:1601 , GLY A:1602 , ASN A:1624 , TYR A:1633 , PHE A:1634 , ALA A:1635 , TYR A:1640 , SER A:1641 , TYR A:1646 , LEU A:1701 , HOH A:1925 , HOH A:1945 , TYR B:1646 , 0RY B:1801	BINDING SITE FOR RESIDUE 0RY A 1801
2	AC2	SOFTWARE	PHE A:1536 , PRO A:1609 , ASN A:1612 , ARG A:1613 , PHE D:1536 , VAL D:1608 , PRO D:1609 , ASN D:1612	BINDING SITE FOR RESIDUE NO3 A 1802
3	AC3	SOFTWARE	VAL A:1626 , ASN A:1643 , TYR A:1646 , 0RY A:1801 , HIS B:1601 , GLY B:1602 , TYR B:1633 , PHE B:1634 , ALA B:1635 , SER B:1641 , TYR B:1646 , LEU B:1701 , HOH B:1969	BINDING SITE FOR RESIDUE 0RY B 1801
4	AC4	SOFTWARE	HIS C:1601 , GLY C:1602 , ASN C:1624 , VAL C:1626 , TYR C:1633 , PHE C:1634 , ALA C:1635 , TYR C:1640 , SER C:1641 , TYR C:1646 , LEU C:1701 , HOH C:1937 , TYR D:1646	BINDING SITE FOR RESIDUE 0RY C 1801
5	AC5	SOFTWARE	PHE B:1536 , VAL B:1608 , PRO B:1609 , ASN B:1612 , PHE C:1536 , PRO C:1609 , ASN C:1612 , ARG C:1613	BINDING SITE FOR RESIDUE NO3 C 1802
6	AC6	SOFTWARE	ASN C:1643 , THR C:1645 , TYR C:1646 , HIS D:1601 , GLY D:1602 , VAL D:1626 , TYR D:1633 , ALA D:1635 , TYR D:1640 , SER D:1641 , TYR D:1646	BINDING SITE FOR RESIDUE 0RY D 1801

Asymmetric Unit

No.	Residues
1	A:1537	-	D:1537
2	B:1537	-	C:1537

(no "Cis Peptide Bond" information available for 4F1L)

(no "SAP(SNP)/Variant" information available for 4F1L)

(no "PROSITE Motif" information available for 4F1L)

(no "Exon" information available for 4F1L)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh........eee..eeeeeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1l A 1534 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      1673      1683      1693      1703      1713

Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh........eeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1l B 1532 KQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1541      1551      1561      1571      1581      1591      1601      1611      1629      1639      1649      1659      1669      1679      1689      1699      1709      1719 
                                                                                                                 1620|                                                                                           
                                                                                                                  1629

Chain C from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh........eee..eeeeeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1l C 1534 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663      1673      1683      1693      1703      1713

Chain D from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh..............eeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1l D 1534 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1543      1553      1563      1573      1583      1593      1603      1613      1625      1635      1645      1655      1665      1675      1685      1695      1705      1715     
                                                                                                                 1622|                                                                                               
                                                                                                                  1625

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4F1L)

(no "CATH Domain" information available for 4F1L)

(no "Pfam Domain" information available for 4F1L)

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	4f1l
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3goy	THE SAME PROTEIN COMPLEXED WITH 3-AMINOBENZAMIDE
3se2	THE SAME PROTEIN COMPLEXED WITH 6(5H)-PHENANTHRIDINONE
3smi	THE SAME PROTEIN COMPLEXED WITH STO1190
3smj	THE SAME PROTEIN COMPLEXED WITH STO1262
4f1q

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

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Gene Ontology (8, 8)

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