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(-) Description

Title :  HUMAN PARP14 (ARTD8), CATALYTIC FRAGMENT IN COMPLEX WITH INHIBITOR H5
 
Authors :  T. Karlberg, A. G. Thorsell, H. Schuler
Date :  22 Sep 16  (Deposition) - 21 Dec 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Adp-Ribosylation, Inhibitor Complex, Transferase Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Peng, A. G. Thorsell, T. Karlberg, H. Schuler, S. Q. Yao
Small Molecule Microarray Based Discovery Of Parp14 Inhibitors.
Angew. Chem. Int. Ed. Engl. V. 56 248 2017
PubMed-ID: 27918638  |  Reference-DOI: 10.1002/ANIE.201609655

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 14
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: R3 PRARE
    Gene: PARP14, BAL2, KIAA1268
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-14,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 8, ARTD8,B AGGRESSIVE LYMPHOMA PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
17AG2Ligand/Ion~{N}'-(3-AMINOCARBONYLPHENYL)-~{N}-[[1-[(2~{R})-2-PHENYLPROPYL]-1,2,3-TRIAZOL-4-YL]METHYL]PENTANEDIAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:1650 , ILE A:1651 , GLN A:1652 , ASN A:1653 , TRP A:1657 , HIS A:1682 , GLY A:1683 , TYR A:1714 , TYR A:1721 , SER A:1722 , TYR A:1727 , TYR A:1792 , HOH A:2028 , HOH A:2029binding site for residue 7AG A 1901
2AC2SOFTWARELYS B:1665 , HIS B:1682 , GLY B:1683 , TYR B:1714 , PHE B:1715 , TYR B:1721 , SER B:1722 , TYR B:1727 , GLY B:1751 , THR B:1774 , LEU B:1782 , VAL B:1784 , HOH B:2013binding site for residue 7AG B 1901

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1618 -B:1618

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LXP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LXP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LXP)

(-) Exons   (0, 0)

(no "Exon" information available for 5LXP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                       
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh.......eeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lxp A 1611 DMKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1620      1630      1640      1650      1660      1670      1680      1690      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799  
                                                                                                                 1699|                                                                                            
                                                                                                                  1709                                                                                            


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh.....eeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lxp B 1610 MDMKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1619      1629      1639      1649      1659      1669      1679      1689      1699|     1720      1730      1740      1750      1760      1770      1780      1790      1800 
                                                                                                                  1699|                                                                                          
                                                                                                                   1711
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LXP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LXP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LXP)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  PAR14_HUMAN | Q460N5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAR14_HUMAN | Q460N5: 3goy 3q6z 3q71 3se2 3smi 3smj 3vfq 4abk 4abl 4d86 4f1l 4f1q 4py4 5lyh 5nqe 5v7t 5v7w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LXP)