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(-) Description

Title :  HUMAN ARTD8 (PARP14, BAL2) - CATALYTIC DOMAIN IN COMPLEX WITH A16(E)
 
Authors :  T. Karlberg, C. D. Andersson, A. Lindgren, S. Spjut, A. G. Thorsell, T. E J. Weigelt, M. Elofsson, A. Linusson, H. Schuler
Date :  07 May 12  (Deposition) - 05 Sep 12  (Release) - 26 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Nad, Adp-Ribose, Parp14, Bal2, Artd8, Artd Transferase Domain, Adp- Ribose Transferase, Adp-Ribosylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. D. Andersson, T. Karlberg, T. Ekblad, A. E. Lindgren, A. G. Thorsell S. Spjut, U. Uciechowska, M. S. Niemiec, P. Wittung-Stafshede, J. Weigelt, M. Elofsson, H. Schuler, A. Linusson
Discovery Of Ligands For Adp-Ribosyltransferases Via Docking-Based Virtual Screening.
J. Med. Chem. V. 55 7706 2012
PubMed-ID: 22823910  |  Reference-DOI: 10.1021/JM300746D

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 14
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)R3 PRARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN
    Gene: BAL2, KIAA1268, PARP14
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-14, B AGGRESSIVE LYMPHOMA PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
10RZ2Ligand/Ion(2E)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2NO31Ligand/IonNITRATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
10RZ1Ligand/Ion(2E)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2NO3-1Ligand/IonNITRATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
10RZ1Ligand/Ion(2E)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2NO31Ligand/IonNITRATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
10RZ2Ligand/Ion(2E)-4-[(3-CARBAMOYLPHENYL)AMINO]-4-OXOBUT-2-ENOIC ACID
2NO31Ligand/IonNITRATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1601 , GLY A:1602 , TYR A:1633 , TYR A:1640 , SER A:1641 , ASN A:1643 , TYR A:1646BINDING SITE FOR RESIDUE 0RZ A 1801
2AC2SOFTWAREPHE A:1536 , VAL A:1538 , PRO A:1609 , ASN A:1612 , PHE B:1536 , PRO B:1609 , ASN B:1612 , ARG B:1613BINDING SITE FOR RESIDUE NO3 B 1801
3AC3SOFTWAREHIS B:1601 , GLY B:1602 , TYR B:1633 , TYR B:1640 , SER B:1641 , TYR B:1646BINDING SITE FOR RESIDUE 0RZ B 1802

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:1537 -B:1537

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F1Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F1Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F1Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4F1Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhh............eeee.hhhhhh............eeeeeeeee...eee...................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1q A 1532 KQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1541      1551      1561      1571      1581      1591      1601      1611      1621||    1635      1645      1655      1665      1677      1687      1697      1707      1717   
                                                                                                                   1622|                                         1672|                                             
                                                                                                                    1627                                          1675                                             


Chain B from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeeeeehhhhhhhhhhhh..........eeee.hhhhhh............eeeeeeeee...eee...................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4f1q B 1534 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1720
                                  1543      1553      1563      1573      1583      1593      1603      1613      1629      1639      1649      1659      1669  ||  1681      1691      1701      1711         
                                                                                                                 1622|                                       1672|                                             
                                                                                                                  1629                                        1675
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4F1Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F1Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F1Q)

(-) Gene Ontology  (8, 8)

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  4f1q
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  PAR14_HUMAN | Q460N5
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  2.4.2.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAR14_HUMAN | Q460N5: 3goy 3q6z 3q71 3se2 3smi 3smj 3vfq 4abk 4abl 4d86 4f1l 4py4 5lxp 5lyh 5nqe 5v7t 5v7w

(-) Related Entries Specified in the PDB File

3goy THE SAME PROTEIN COMPLEXED WITH 3-AMINOBENZAMIDE
3se2 THE SAME PROTEIN COMPLEXED WITH 6(5H)-PHENANTHRIDINONE
3smi THE SAME PROTEIN COMPLEXED WITH STO1190
3smj THE SAME PROTEIN COMPLEXED WITH STO1262
4f1l THE SAME PROTEIN COMPLEXED WITH A16(Z)