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(-) Description

Title :  HUMAN PARP14 (ARTD8), CATALYTIC FRAGMENT IN COMPLEX WITH AN N-ARYL PIPERAZINE INHIBITOR
 
Authors :  T. Karlberg, A. G. Thorsell, H. Schuler
Date :  20 Apr 17  (Deposition) - 24 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Adp-Ribosylation, Inhibitor Complex, Transferase Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Upton, M. Meyers, A. G. Thorsell, T. Karlberg, J. Holechek, R. Lease G. Schey, E. Wolf, A. Lucente, H. Schuler, D. Ferraris
Design And Synthesis Of Potent Inhibitors Of The Mono(Adp-Ribosyl)Transferase, Parp14.
Bioorg. Med. Chem. Lett. V. 27 2907 2017
PubMed-ID: 28495083  |  Reference-DOI: 10.1016/J.BMCL.2017.04.089

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 14
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNIC28-BSA4
    Expression System Taxid: 469008
    Expression System Variant: R3 PRARE
    Expression System Vector Type: PLASMID
    Gene: PARP14, BAL2, KIAA1268
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-14,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 8, ARTD8,B AGGRESSIVE LYMPHOMA PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
194Z2Ligand/Ion3-[[4-[4-(4-FLUOROPHENYL)PIPERAZIN-1-YL]-4-OXIDANYLIDENE-BUTANOYL]AMINO]BENZAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
194Z1Ligand/Ion3-[[4-[4-(4-FLUOROPHENYL)PIPERAZIN-1-YL]-4-OXIDANYLIDENE-BUTANOYL]AMINO]BENZAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
194Z1Ligand/Ion3-[[4-[4-(4-FLUOROPHENYL)PIPERAZIN-1-YL]-4-OXIDANYLIDENE-BUTANOYL]AMINO]BENZAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:1682 , GLY A:1683 , TYR A:1714 , PHE A:1715 , ALA A:1716 , TYR A:1721 , SER A:1722 , TYR A:1727 , GLY A:1751 , ASN A:1752 , HIS A:1753 , THR A:1774 , LEU A:1782 , VAL A:1784 , 94Z B:1901binding site for residue 94Z A 1901
2AC2SOFTWARE94Z A:1901 , HIS B:1682 , GLY B:1683 , TYR B:1714 , PHE B:1715 , ALA B:1716 , TYR B:1721 , SER B:1722 , TYR B:1727 , GLY B:1751 , THR B:1774 , LEU B:1782 , VAL B:1784binding site for residue 94Z B 1901

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:1618 -A:1618
2B:1618 -B:1618

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NQE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NQE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NQE)

(-) Exons   (0, 0)

(no "Exon" information available for 5NQE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhh......eeeeeeeeehhhhhhhhhhhhhhhhh.......eeeeeeeehhhhhhhhhhhh......eeee.hhhhhh............eeeeeeeee...eee.........eee..eeeee..eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5nqe A 1612 MKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1621      1631      1641      1651      1661      1671      1681      1691      1711      1721      1731      1741      1751      1761      1771      1781      1791      1801
                                                                                                                1699|                                                                                           
                                                                                                                 1710                                                                                           


Chain B from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhh......eeeeeeeeehhhhhhhhhhhhhhhhh.......eeeeeeeehhhhhhhhhhhh......eeee.hhhhhh............eeeeeeeee...eee.....................eee.......eeee.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5nqe B 1612 MKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLITFRK 1801
                                  1621      1631      1641      1651      1661      1671      1681      1691      1711      1721      1731      1741      1751      1761      1771      1781      1791      1801
                                                                                                                1699|                                                                                           
                                                                                                                 1710
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NQE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NQE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NQE)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  PAR14_HUMAN | Q460N5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAR14_HUMAN | Q460N5: 3goy 3q6z 3q71 3se2 3smi 3smj 3vfq 4abk 4abl 4d86 4f1l 4f1q 4py4 5lxp 5lyh 5v7t 5v7w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5NQE)