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(-) Description

Title :  HUMAN GLUCOKINASE IN COMPLEX WITH NOVEL PYRAZOLE ACTIVATOR.
 
Authors :  R. J. Skene, D. J. Hosfiled
Date :  10 Mar 17  (Deposition) - 31 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Activator, Complex, Glucokinase, Transferase-Transferase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. S. Cheruvallath, S. L. Gwaltney, M. Sabat, M. Tang, H. Wang, A. Jennings, D. Hosfield, B. Lee, Y. Wu, P. Halkowycz, C. E. Grimshaw
Discovery Of Potent And Orally Active 1, 4-Disubstituted Indazoles As Novel Allosteric Glucokinase Activators.
Bioorg. Med. Chem. Lett. V. 27 2678 2017
PubMed-ID: 28512030  |  Reference-DOI: 10.1016/J.BMCL.2017.04.041

(-) Compounds

Molecule 1 - GLUCOKINASE
    Chains: A
    EC Number: 2.7.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GCK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEXOKINASE TYPE IV,HK IV,HEXOKINASE-4,HK4,HEXOKINASE-D

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
18WJ1Ligand/Ion(2S)-3-CYCLOHEXYL-2-[4-(CYCLOPENTYLSULFONYL)-2-OXOPYRIDIN-1(2H)-YL]-N-(1,3-THIAZOL-2-YL)PROPANAMIDE
2GLC1Ligand/IonALPHA-D-GLUCOSE
3IOD3Ligand/IonIODIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:204 , ASP A:205 , ILE A:225 , ASN A:231 , GLU A:256 , GLU A:290 , HOH A:673 , HOH A:696 , HOH A:708 , HOH A:721binding site for residue GLC A 500
2AC2SOFTWARETYR A:61 , VAL A:62 , ARG A:63 , SER A:64 , THR A:65 , PRO A:66 , GLU A:67 , TRP A:99 , TYR A:214 , LYS A:459binding site for residue 8WJ A 501
3AC3SOFTWAREASN A:204 , LYS A:459binding site for residue IOD A 502
4AC4SOFTWARELEU A:13 , GLU A:17binding site for residue IOD A 503
5AC5SOFTWAREHIS A:416binding site for residue IOD A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5V4X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5V4X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V4X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V4X)

(-) Exons   (0, 0)

(no "Exon" information available for 5V4X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:420
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...........eeeeee.........eeeeeee...eeeeeeeeee..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhh....ee....hhhhhhhhhhhhhh..eeeeeee...eeeeeeee.hhh........eeeee.hhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5v4x A   9 KPMPLTLVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVKVGEWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVEGDEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQIYNILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACKKACMLG 464
                                    18        28        38        48        58        68        78        88    || 103       113       123       133       143      |181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391     ||404       414       424       434       444       454       464
                                                                                                               93|                                                150|                                                                                                                                                                                                                       397|                                                               
                                                                                                                99                                                 179                                                                                                                                                                                                                        401
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V4X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V4X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V4X)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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  5v4x
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  HXK4_HUMAN | P35557
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  2.7.1.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HXK4_HUMAN | P35557: 1glk 1v4s 1v4t 3a0i 3f9m 3fgu 3fr0 3goi 3h1v 3id8 3idh 3imx 3qic 3s41 3vev 3vey 3vf6 4dch 4dhy 4ise 4isf 4isg 4iwv 4ixc 4l3q 4lc9 4mle 4mlh 4no7 4rch 5v4w

(-) Related Entries Specified in the PDB File

5v4w