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(-) Description

Title :  HUMAN GLUCOKINASE IN COMPLEX WITH NOVEL AMINO THIAZOLE ACTIVATOR
 
Authors :  W. C. Voegtli
Date :  06 Sep 13  (Deposition) - 25 Sep 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Sugar Kinase, Allosteric Activator, Small Molecule, Transferase- Transferase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. J. Hinklin, S. A. Boyd, M. J. Chicarelli, K. R. Condroski, W. E. Dewolf, P. A. Lee, W. Lee, A. Singh, L. Thomas, W. C. Voegtli, L. Williams, T. D. Aicher
Identification Of A New Class Of Glucokinase Activators Through Structure-Based Design.
J. Med. Chem. V. 56 7669 2013
PubMed-ID: 24015910  |  Reference-DOI: 10.1021/JM401116K

(-) Compounds

Molecule 1 - GLUCOKINASE
    Chains: A
    EC Number: 2.7.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: SEE REMARK 999
    Gene: GCK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEXOKINASE TYPE IV, HK IV, HEXOKINASE-4, HK4, HEXOKINASE-D

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GLC1Ligand/IonALPHA-D-GLUCOSE
2VO11Ligand/Ion3-(BENZYLOXY)-N-(4-METHYL-1,3-THIAZOL-2-YL)PYRIDIN-2-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:151 , PHE A:152 , PRO A:153 , THR A:168 , LYS A:169 , ASN A:204 , ASP A:205 , ILE A:225 , ASN A:231 , GLU A:256 , GLN A:287 , GLU A:290BINDING SITE FOR RESIDUE GLC A 501
2AC2SOFTWARETYR A:61 , VAL A:62 , ARG A:63 , SER A:64 , PRO A:66 , ILE A:211 , TYR A:214 , TYR A:215 , VAL A:452 , VAL A:455BINDING SITE FOR RESIDUE VO1 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MLE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MLE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MLE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MLE)

(-) Exons   (0, 0)

(no "Exon" information available for 4MLE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4mlea1 A:14-218 Glucokinase                                                                                                                                                                                 d4mlea2 A:219-461 Glucokinase                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...........eeeeee........eeeeeeee...eeeeeeeee..........eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee...eeeee..eeee...............hhhhhhhhhhh.......eeeeeehhhhhhhhhhhh....eeeeeee...eeeeeeee.hhh........eeeee.hhhhh..........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mle A  14 TLVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVEGDEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQIYNILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACKKAC 461
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MLE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MLE)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HXK4_HUMAN | P35557: 1glk 1v4s 1v4t 3a0i 3f9m 3fgu 3fr0 3goi 3h1v 3id8 3idh 3imx 3qic 3s41 3vev 3vey 3vf6 4dch 4dhy 4ise 4isf 4isg 4iwv 4ixc 4l3q 4lc9 4mlh 4no7 4rch 5v4w 5v4x

(-) Related Entries Specified in the PDB File

4mlh