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(-) Description

Title :  HUMAN GLUCOKINASE IN COMPLEX WITH A NANOMOLAR ACTIVATOR.
 
Authors :  P. Petit, G. Ferry, M. Antoine, J. A. Boutin, A. Kotschy, F. Perron-Sier L. Mamelli, L. Vuillard
Date :  19 Nov 13  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Pancreas, Transferase-Transferase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Petit, M. Antoine, G. Ferry, J. A. Boutin, A. Lagarde, L. Gluais, R. Vincentelli, L. Vuillard
The Active Conformation Of Human Glucokinase Is Not Altered By Allosteric Activators.
Acta Crystallogr. , Sect. D 2014
PubMed: search  |  Reference-DOI: 10.1107/S0907444911036729

(-) Compounds

Molecule 1 - GLUCOKINASE
    Chains: A
    EC Number: 2.7.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: GLUCOKINASE
    Gene: GCK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEXOKINASE TYPE IV, HK IV, HEXOKINASE-4, HK4, HEXOKINASE-D

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
12N81Ligand/Ion(2R)-2-[3-CHLORO-4-(METHYLSULFONYL)PHENYL]-3-[(1R)-3-OXOCYCLOPENTYL]-N-(PYRAZIN-2-YL)PROPANAMIDE
2GLC1Ligand/IonALPHA-D-GLUCOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:151 , PHE A:152 , PRO A:153 , THR A:168 , LYS A:169 , ASN A:204 , ASP A:205 , ILE A:225 , CYS A:230 , ASN A:231 , GLU A:256 , GLN A:287 , GLU A:290 , HOH A:609 , HOH A:699BINDING SITE FOR RESIDUE GLC A 501
2AC2SOFTWARETYR A:61 , VAL A:62 , ARG A:63 , THR A:65 , GLU A:67 , GLY A:68 , MET A:210 , TYR A:214 , TYR A:215 , HIS A:218 , MET A:235 , VAL A:452 , VAL A:455 , ALA A:456 , HOH A:804BINDING SITE FOR RESIDUE 2N8 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NO7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NO7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NO7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NO7)

(-) Exons   (0, 0)

(no "Exon" information available for 4NO7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...........eeeeee........eeeeeeee...eeeeeeeee.eeeeeeeee.hhhhhh.hhhhhhhhhhhhhhhhhhhh......eeeeeee...eeeee..eeee...............hhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhh..eeeeeee...eeeeeeee.hhh........eeeee.hhhhh.....hhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhh...........hhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4no7 A   5 NLYFQGMKKEKVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVKVSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVEGDEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQIYNILSTLGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSFKERFHASVRRLTPSCEITFIESEEGSGRGAALVSAVACK 458
                                    14        24        34        44        54        64        74        84      |102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452      
                                                                                                                 91|                                                                                                                                                                                                                                                                                                                                                                      
                                                                                                                 100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NO7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NO7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NO7)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HXK4_HUMAN | P35557: 1glk 1v4s 1v4t 3a0i 3f9m 3fgu 3fr0 3goi 3h1v 3id8 3idh 3imx 3qic 3s41 3vev 3vey 3vf6 4dch 4dhy 4ise 4isf 4isg 4iwv 4ixc 4l3q 4lc9 4mle 4mlh 4rch 5v4w 5v4x

(-) Related Entries Specified in the PDB File

1v4s 3id8