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(-) Description

Title :  TTK KINASE DOMAIN IN COMPLEX WITH MPS-BAY2B
 
Authors :  J. Uitdehaag, N. Willemsen-Seegers, J. De Man, R. C. Buijsman, G. J. R.
Date :  22 Feb 17  (Deposition) - 31 May 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Inhibitor, Mitosis, Mps1, Joost Uitdehaag And Nicole Seegers 13021, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. M. Uitdehaag, J. De Man, N. Willemsen-Seegers, M. B. W. Prinsen, M. A. A. Libouban, J. G. Sterrenburg, J. J. P. De Wit, J. R. F. De Vetter J. A. D. M. De Roos, R. C. Buijsman, G. J. R. Zaman
Target Residence Time-Guided Optimization On Ttk Kinase Results In Inhibitors With Potent Anti-Proliferative Activity.
J. Mol. Biol. V. 429 2211 2017
PubMed-ID: 28539250  |  Reference-DOI: 10.1016/J.JMB.2017.05.014

(-) Compounds

Molecule 1 - DUAL SPECIFICITY PROTEIN KINASE TTK
    Chains: A
    EC Number: 2.7.12.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 519-808
    Gene: TTK, MPS1, MPS1L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE,PYT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
18Q51Ligand/Ion~{N}-CYCLOPROPYL-4-[8-(2-METHYLPROPYLAMINO)IMIDAZO[1,2-A]PYRAZIN-3-YL]BENZAMIDE
2NA5Ligand/IonSODIUM ION
3PG01Ligand/Ion2-(2-METHOXYETHOXY)ETHANOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:541 , ALA A:551 , LYS A:553 , ILE A:586 , MET A:600 , MET A:602 , GLU A:603 , GLY A:605 , ASN A:606 , LEU A:654 , ILE A:663 , PG0 A:907 , HOH A:1012binding site for residue 8Q5 A 901
2AC2SOFTWAREPRO A:621 , ARG A:624 , GLU A:761 , TYR A:790binding site for residue NA A 902
3AC3SOFTWARETRP A:628 , LEU A:785 , VAL A:791binding site for residue NA A 903
4AC4SOFTWAREGLU A:571 , ASP A:664 , HOH A:1011 , HOH A:1023binding site for residue NA A 904
5AC5SOFTWAREASN A:688 , MET A:690 , TRP A:718binding site for residue NA A 905
6AC6SOFTWAREASN A:688 , THR A:732 , PRO A:733 , PHE A:734binding site for residue NA A 906
7AC7SOFTWARELYS A:553 , TYR A:568 , MET A:600 , 8Q5 A:901 , HOH A:1011binding site for residue PG0 A 907

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5N84)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5N84)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5N84)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5N84)

(-) Exons   (0, 0)

(no "Exon" information available for 5N84)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeeeeeeeeee...eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhh........eeeeee...eeeeee....eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee..eeee.................hhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...........hhhhhhhhhhhh........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5n84 A 516 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQQVGTVNYMPPEAIKDMKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 794
                                   525       535       545       555       565       575       585       595       605       615       625       635       645       655       665    || 687       697||     718       728       738       748       758       768       778       788      
                                                                                                                                                                                    670|            698|                                                                                    
                                                                                                                                                                                     683             710
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5N84)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5N84)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5N84)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  5n84
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  TTK_HUMAN | P33981
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  2.7.12.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTK_HUMAN | P33981: 2x9e 2zmc 2zmd 3cek 3dbq 3gfw 3h9f 3hmn 3hmo 3hmp 3vqu 3w1f 3wyx 3wyy 3wzj 3wzk 4b94 4bhz 4bi0 4bi1 4bi2 4c4e 4c4f 4c4g 4c4h 4c4i 4c4j 4cv8 4cv9 4cva 4d2s 4h7x 4h7y 4js8 4jt3 4o6l 4zeg 5ap0 5ap1 5ap2 5ap3 5ap4 5ap5 5ap6 5ap7 5eh0 5ehl 5eho 5ehy 5ei2 5ei6 5ei8 5ljj 5n7v 5n87 5n93 5n9s 5na0 5nad

(-) Related Entries Specified in the PDB File

5n7v CRYSTALS WITH SIMILAR EXPERIMENTAL TREATMENT