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(-) Description

Title :  CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO BETA2 ADAPTIN CLATHRIN BOX MOTIF
 
Authors :  J. Muenzner, S. C. Graham
Date :  22 Oct 16  (Deposition) - 09 Nov 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,C,D
Keywords :  Endocytosis, Adaptor Polypeptide 2, Ap2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Muenzner, L. M. Traub, B. T. Kelly, S. C. Graham
Cellular And Viral Peptides Bind Multiple Sites On The N-Terminal Domain Of Clathrin.
Traffic V. 18 44 2017
PubMed-ID: 27813245  |  Reference-DOI: 10.1111/TRA.12457

(-) Compounds

Molecule 1 - CLATHRIN HEAVY CHAIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: POPT3G
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Gene: CLTC
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: N-TERMINAL RESIDUES 'GS' ARE RESIDUAL FOLLOWING CLEAVAGE OF THE PURIFICATION TAG.
 
Molecule 2 - AP-2 COMPLEX SUBUNIT BETA
    Chains: C, D
    Engineered: YES
    Fragment: UNP RESIDUES 629-637
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: N-TERMINAL RESIDUE 'C' WAS ADDED TO FACILITATE CHEMICAL MODIFICATIONS (NOT USED IN THIS STUDY)
    Synonym: AP105B,ADAPTOR PROTEIN COMPLEX AP-2 SUBUNIT BETA,ADAPTOR- RELATED PROTEIN COMPLEX 2 SUBUNIT BETA,BETA-2-ADAPTIN,BETA-ADAPTIN, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE CHAIN,PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA SUBUNIT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ACD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5M5R)

(-) Sites  (0, 0)

(no "Site" information available for 5M5R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M5R)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee.hhhh.hhhhh....eeeee..eeeeeeee..eeeeeeee.......eeee....eeee.....eeeeee..eeeeee....eeeeeee....eeeeee....eeeeee..eeeeee.......eeeee.hhhhh..eeeeeee.....eeeeeeeeee..eeeeeeeeee....eeeeee..eeeeeee........eeeeeeeee....eeeeeee.............eeeee..........eeeeeee....eeeeee...eeeeee.....eeeeee.....eeeeeee....eeeeee...eeeeeee...hhhhhhhhh..hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5m5r A   4 ILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEEL 363
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363


Chain C from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5m5r C   2 GDLLNLDL   9


Chain D from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5m5r D   2 GDLLNL   7
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M5R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M5R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M5R)

(-) Gene Ontology  (45, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AP2B1_HUMAN | P63010: 1e42 2g30 2iv8 2iv9 2jkr 2jkt 2vgl 2xa7 4uqi
        CLH1_BOVIN | P49951: 1b89 1utc 1xi4 1xi5 3gc3 3gd1 3iyv 3lvg 3lvh 3qil 5m5s 5m5t 5m5u 5m5v 5m61

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