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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A CLATHRIN HEAVY CHAIN AND CLATHRIN LIGHT CHAIN COMPLEX
 
Authors :  J. D. Wilbur, P. K. Hwang, J. A. Ybe, M. Lane, B. D. Sellers, M. P. Jacobson R. J. Fletterick, F. M. Brodsky
Date :  20 Feb 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  7.94
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Self Assembly, Coated Pit, Cytoplasmic Vesicle, Membrane, Calcium, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Wilbur, P. K. Hwang, J. A. Ybe, M. Lane, B. D. Sellers, M. P. Jacobson, R. J. Fletterick, F. M. Brodsky
Conformation Switching Of Clathrin Light Chain Regulates Clathrin Lattice Assembly.
Dev. Cell V. 18 841 2010
PubMed-ID: 20493816  |  Reference-DOI: 10.1016/J.DEVCEL.2010.04.007

(-) Compounds

Molecule 1 - CLATHRIN HEAVY CHAIN 1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CLTC
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
 
Molecule 2 - CLATHRIN LIGHT CHAIN B
    Chains: D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CLTB, CLTLB
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: LCB

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 203)

Asymmetric/Biological Unit (1, 203)
No.NameCountTypeFull Name
1UNK203Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3LVG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LVG)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric/Biological Unit
No.Residues
1Asp A:1133 -Pro A:1134
2Ser A:1136 -Tyr A:1137
3Tyr A:1137 -Met A:1138
4Asp B:1133 -Pro B:1134
5Ser B:1136 -Tyr B:1137
6Tyr B:1137 -Met B:1138
7Unk D:174 -Unk D:175
8Ile E:89 -Ala E:90
9Ala E:90 -Gln E:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LVG)

(-) PROSITE Motifs  (1, 9)

Asymmetric/Biological Unit (1, 9)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CHCRPS50236 Clathrin heavy-chain (CHCR) repeat profile.CLH1_BOVIN537-683
686-828
833-972
979-1124
1128-1269
 
 
1274-1420
 
 
1423-1566
 
 		  9-
-
-
-
A:1128-1269
B:1128-1269
C:1128-1269
A:1274-1420
B:1274-1420
C:1274-1420
A:1423-1566
B:1423-1566
C:1423-1566

(-) Exons   (0, 0)

(no "Exon" information available for 3LVG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:553
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:553
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   
          CLH1_BOVIN   1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh...................hhhhhh......................hhhhhhh.......hhhhhhhh..........hhhhhhhhhh..................hhhhhhhhhhh........hhhhh.............hhhhh............hhhhhhhhhhhh......hhhhhhhhh.....hhhhh.............hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                 ---CHCR  PDB: A:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: A:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: A:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvg A 1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   


Chain B from PDB  Type:PROTEIN  Length:553
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:553
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   
          CLH1_BOVIN   1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhh.....hhhhhh...........hhhhhhh.......hhhhhhhh..........hhhhhhhhhh..................hhhhhhhhhhh........hhhhh.............hhhhh............hhhhhhhhhhhh......hhhhhhhhh.....hhhhh......hhhhh..hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhh..................hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                 ---CHCR  PDB: B:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: B:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: B:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvg B 1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   


Chain C from PDB  Type:PROTEIN  Length:553
 aligned with CLH1_BOVIN | P49951 from UniProtKB/Swiss-Prot  Length:1675

    Alignment length:553
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   
          CLH1_BOVIN   1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC01 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC02 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC03 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC04 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC05 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC06 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC07 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC08 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC09 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC10 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC11 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (11)
          Pfam domains (12) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Clathrin-3lvgC12 C:1423-1565                                                                                                                   ----------------------------------------------------------------- Pfam domains (12)
         Sec.struct. author ................................hhhhhh.....................hhhhhhhh.......hhhhhhhhhh........hhhhhhhhhh.................hhhhhhhhhhh.........hhhhh.............hhhhh...hhhhh....hhhhhhhhhhhh......hhhhhhhhh.....hhhhh.............hhhhhh.....hhhhhhhhhhhhhh...hhhhhhhh..........hhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhh......hhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh.........hhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CHCR  PDB: - UniProt: 979-1124                 ---CHCR  PDB: C:1128-1269 UniProt: 1128-1269                                                                                                     ----CHCR  PDB: C:1274-1420 UniProt: 1274-1420                                                                                                          --CHCR  PDB: C:1423-1566 UniProt: 1423-1566                                                                                                       ---------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvg C 1078 NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESLRKEEEQATETQ 1630
                                  1087      1097      1107      1117      1127      1137      1147      1157      1167      1177      1187      1197      1207      1217      1227      1237      1247      1257      1267      1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517      1527      1537      1547      1557      1567      1577      1587      1597      1607      1617      1627   


Chain D from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................................hhhhhh...hhhhhh.....hhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh...hhhhhhhhh..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3lvg D    1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  205
                            ||||||||10||||||||21||||||||32||||||||43||||||||54||||||||65||||||||93       103       113       123       133       143       153       163     ||175|||||||185|||||||195|||||||205
                            1-UNK|||10-UNK|||20-UNK|||30-UNK|||40-UNK|||50-UNK|||60-UNK|||69-UNK                                                                           169||||||180-UNK||189-UNK||198-UNK|||
                             2-UNK|||12-UNK|||21-UNK|||31-UNK|||41-UNK|||51-UNK|||61-UNK|||70-UNK                                                                           172-UNK||181-UNK||190-UNK||199-UNK||
                              3-UNK|| 13-UNK|| 22-UNK|| 32-UNK|| 42-UNK|| 52-UNK|| 62-UNK|| 71-UNK                                                                           173-UNK||182-UNK||191-UNK||200-UNK|
                               4-UNK|  14-UNK|  23-UNK|  33-UNK|  43-UNK|  53-UNK|  63-UNK|  72-UNK                                                                           174-UNK| 183-UNK| 192-UNK| 201-UNK
                                5-UNK   15-UNK   25-UNK   34-UNK   44-UNK   54-UNK   64-UNK   91                                                                               175-UNK  184-UNK  193-UNK  202-UNK
                                 6-UNK   16-UNK   26-UNK   35-UNK   45-UNK   55-UNK   65-UNK                                                                                    176-UNK  185-UNK  194-UNK  203-UNK
                                  7-UNK   17-UNK   27-UNK   36-UNK   47-UNK   56-UNK   66-UNK                                                                                    177-UNK  186-UNK  195-UNK  204-UNK
                                   8-UNK   18-UNK   28-UNK   38-UNK   48-UNK   57-UNK   67-UNK                                                                                    178-UNK  187-UNK  196-UNK  205-UNK
                                    9-UNK   19-UNK   29-UNK   39-UNK   49-UNK   58-UNK   68-UNK                                                                                    179-UNK  188-UNK  197-UNK    


Chain E from PDB  Type:PROTEIN  Length:116
 aligned with CLCB_BOVIN | P04975 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:131
                                    82        92       102       112       122       132       142       152       162       172       182       192       202 
          CLCB_BOVIN     73 GDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPK  203
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.-......-...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-------------hhhhhhhhhh.......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvg E    1 xxxxxxxx-xxxxxx-IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA-------------xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  203
                            ||||||||10||||| | 92       102       112       122       132       142       152   |     -       172|||||||182|||||||192|||||||202|
                            |||||||| 11-UNK |                                                                156           170-UNK||179-UNK||188-UNK||197-UNK||
                            1-UNK||| |12-UNK|                                                                               171-UNK||180-UNK||189-UNK||198-UNK|
                             2-UNK|| | 13-UNK                                                                                172-UNK||181-UNK||190-UNK||199-UNK
                              3-UNK| |  14-UNK                                                                                173-UNK| 182-UNK| 191-UNK| 200-UNK
                               4-UNK |   15-UNK                                                                                174-UNK  183-UNK  192-UNK  201-UNK
                                5-UNK|     89                                                                                   175-UNK  184-UNK  193-UNK  202-UNK
                                 6-UNK                                                                                           176-UNK  185-UNK  194-UNK  203-UNK
                                  7-UNK                                                                                           177-UNK  186-UNK  195-UNK    
                                   8-UNK                                                                                           178-UNK  187-UNK  196-UNK   


Chain F from PDB  Type:PROTEIN  Length:132
 aligned with CLCB_BOVIN | P04975 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:135
                                    78        88        98       108       118       128       138       148       158       168       178       188       198     
          CLCB_BOVIN     69 ATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPK  203
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------- -----------C lathrin_lg_ch-3lvgF01 F:21-168                                                 ---------------------------------- Pfam domains (1)
           Pfam domains (2) -------- -----------C lathrin_lg_ch-3lvgF02 F:21-168                                                 ---------------------------------- Pfam domains (2)
           Pfam domains (3) -------- -----------C lathrin_lg_ch-3lvgF03 F:21-168                                                 ---------------------------------- Pfam domains (3)
         Sec.struct. author .hhhhhhh-............-...........hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3lvg F    1 xxxxxxxx-xxxxxxxxxxxx-QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI-xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  203
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                             2-UNK|| | 13-UNK||  91                                                                             171-UNK||180-UNK||189-UNK||198-UNK|
                              3-UNK| |  14-UNK|                                                                                  172-UNK| 181-UNK| 190-UNK| 199-UNK
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LVG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LVG)

(-) Pfam Domains  (2, 15)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)
(-)
Family: Clathrin (2)
(-)
Bos taurus (Bovine) (2)
1aClathrin-3lvgC01C:1423-1565
1bClathrin-3lvgC02C:1423-1565
1cClathrin-3lvgC03C:1423-1565
1dClathrin-3lvgC04C:1423-1565
1eClathrin-3lvgC05C:1423-1565
1fClathrin-3lvgC06C:1423-1565
1gClathrin-3lvgC07C:1423-1565
1hClathrin-3lvgC08C:1423-1565
1iClathrin-3lvgC09C:1423-1565
1jClathrin-3lvgC10C:1423-1565
1kClathrin-3lvgC11C:1423-1565
1lClathrin-3lvgC12C:1423-1565
(-)
Clan: no clan defined [family: Clathrin_lg_ch] (2)

(-) Gene Ontology  (18, 27)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (CLH1_BOVIN | P49951)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:1900126    negative regulation of hyaluronan biosynthetic process    Any process that stops, prevents or reduces the frequency, rate or extent of hyaluronan biosynthetic process.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0030132    clathrin coat of coated pit    The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.
    GO:0030130    clathrin coat of trans-Golgi network vesicle    A clathrin coat found on a vesicle of the trans-Golgi network.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0030659    cytoplasmic vesicle membrane    The lipid bilayer surrounding a cytoplasmic vesicle.
    GO:0042470    melanosome    A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030117    membrane coat    Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Chain E,F   (CLCB_BOVIN | P04975)
molecular function
    GO:0032050    clathrin heavy chain binding    Interacting selectively and non-covalently with a clathrin heavy chain.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0072583    clathrin-dependent endocytosis    An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0030118    clathrin coat    A membrane coat found on coated pits and some coated vesicles; consists of polymerized clathrin triskelions, each comprising three clathrin heavy chains and three clathrin light chains, linked to the membrane via one of the AP adaptor complexes.
    GO:0030132    clathrin coat of coated pit    The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.
    GO:0030130    clathrin coat of trans-Golgi network vesicle    A clathrin coat found on a vesicle of the trans-Golgi network.
    GO:0030125    clathrin vesicle coat    A clathrin coat found on a vesicle.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0030659    cytoplasmic vesicle membrane    The lipid bilayer surrounding a cytoplasmic vesicle.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  CLH1_BOVIN | P49951
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLCB_BOVIN | P04975: 3lvh
        CLH1_BOVIN | P49951: 1b89 1utc 1xi4 1xi5 3gc3 3gd1 3iyv 3lvh 3qil 5m5r 5m5s 5m5t 5m5u 5m5v 5m61

(-) Related Entries Specified in the PDB File

3lvh