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(-) Description

Title :  THE STRUCTURE OF THE FUSED PERMUTED HEXAMERIC SHELL PROTEIN MSM0275 FROM THE RMM MICROCOMPARTMENT
 
Authors :  E. Mallette, M. S. Kimber
Date :  03 Aug 16  (Deposition) - 14 Dec 16  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Bacterial Microcompartment, Fused Permuted Hexameric Shell Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Mallette, M. S. Kimber
A Complete Structural Inventory Of The Mycobacterial Microcompartment Shell Proteins Constrains Models Of Global Architecture And Transport.
J. Biol. Chem. V. 292 1197 2017
PubMed-ID: 27927988  |  Reference-DOI: 10.1074/JBC.M116.754093

(-) Compounds

Molecule 1 - RMM MICROCOMPARTMENT SHELL PROTEIN MSM0275
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET28A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: MSMEG_0275, MSMEI_0268
    Organism Scientific: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / MC(2)155)
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155
    Synonym: MICROCOMPARTMENTS PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:168 , MET A:169 , ILE A:170binding site for residue CL A 301
2AC2SOFTWAREARG D:168 , MET D:169 , ILE D:170binding site for residue CL D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L39)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Ala A:42 -Pro A:43
2Ala A:144 -Pro A:145
3Ala B:42 -Pro B:43
4Ala B:144 -Pro B:145
5Ala C:42 -Pro C:43
6Ala C:144 -Pro C:145
7Ala D:42 -Pro D:43
8Ala D:144 -Pro D:145
9Ala E:42 -Pro E:43
10Ala E:144 -Pro E:145
11Ala F:42 -Pro F:43
12Ala F:144 -Pro F:145

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L39)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L39)

(-) Exons   (0, 0)

(no "Exon" information available for 5L39)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhh..eeeeeee....eeeeeeehhhhhhhhhhhhhhhh..hhhhh...eeeeeeee...hhhhhhhhhhhh.........eeeeeeee..hhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l39 A   2 AELRSFIFIDRLQPQTMSYLGTWIKGALPRANMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVLQGAKLAAALE 209
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhhhh.........eeeeeeee..hhhhhhhhhhhh....eeeeeee....eeeeeeehhhhhhhhhhhhhhhh..hhhhh...eeeeeeee...hhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l39 B   2 AELRSFIFIDRLQPQTMSYLGTWIKGALPRANMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVLQGAKLAAALEH 210
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201         


Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhh..........eeeeeeee..hhhhhhhhhhhhhh..eeeeeee....eeeeeeehhhhhhhhhhhhhhhh..hhhhh...eeeeeeee...hhhhhhhhhh...........eeeeeeeehhhhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l39 C   2 AELRSFIFIDRLQPQTMSYLGTWIKGANMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVLQG 201
                                    11        21      ||35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      
                                                     28|                                                                                                                                                                        
                                                      33                                                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhh....eeeeeeee..hhhhhhhhhhh.....eeeeeee....eeeeeeehhhhhhhhhhhhhhhhh.........eeeeeeee...hhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l39 D   2 AELRSFIFIDRLQPQTMSYLGTWNMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVLQG 201
                                    11        21  ||    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199  
                                                 24|                                                                                                                                                                        
                                                  33                                                                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:198
                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhh........hhhhh.eeeeeeee..hhhhhhhhhhhh....eeeeeee....eeeeeeehhhhhhhhhhhhhhhhh.hhhhh...eeeeeeee...hhhhhhhhhh...........eeeeeeeehhhhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l39 E   2 AELRSFIFIDRLQPQTMSYLGTWIKGALPRANMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVL 199
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191        


Chain F from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...hhhhhhhhhh...........eeeeeeee..hhhhhhhhhhhhhh..eeeeeee....eeeeeeehhhhhhhhhhhhhhhh..........eeeeeeee...hhhhhhhhhhhh.........eeeeeeeehhhhhhhhhhhhhhhh..eeeeee.....eeeeeeehhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l39 F   2 AELRSFIFIDRLQPQTMSYLGTWIKGALPRANMAAQIIEVAPGLDIEGVTDVALKHAEVKAGILVVERQFGYLEFHGETGAVKAAADAALDYLGGDPDAAVRPEILASRIISSIDHQHAFLINRNKIGSMVLPGESLFVLEVAPASYAILATNEAEKAADVKVVDFRMIGATGRVYLSGTEADVRQAADAARDALAVLQGAK 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L39)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L39)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L39)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5L39)

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  Cis Peptide Bonds
    Ala A:144 - Pro A:145   [ RasMol ]  
    Ala A:42 - Pro A:43   [ RasMol ]  
    Ala B:144 - Pro B:145   [ RasMol ]  
    Ala B:42 - Pro B:43   [ RasMol ]  
    Ala C:144 - Pro C:145   [ RasMol ]  
    Ala C:42 - Pro C:43   [ RasMol ]  
    Ala D:144 - Pro D:145   [ RasMol ]  
    Ala D:42 - Pro D:43   [ RasMol ]  
    Ala E:144 - Pro E:145   [ RasMol ]  
    Ala E:42 - Pro E:43   [ RasMol ]  
    Ala F:144 - Pro F:145   [ RasMol ]  
    Ala F:42 - Pro F:43   [ RasMol ]  
 

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  5l39
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 Related Entries

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(-) Related Entries Specified in the PDB File

5l37 5l38 5suh