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(-) Description

Title :  CREBBP BROMODOMAIN IN COMPLEX WITH CPD 44 (3-((5-ACETYL-1-(CYCLOPROPYLMETHYL)-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[4,3-C]PYRIDIN-3-YL)AMINO)-N-ISOPROPYLBENZAMIDE)
 
Authors :  J. M. Murray, G. Boenig
Date :  12 Jul 16  (Deposition) - 02 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.09
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Crebbp Bromodomain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. D. Crawford, F. A. Romero, K. W. Lai, V. Tsui, A. M. Taylor, G. De Leon Boenig, C. L. Noland, J. Murray, J. Ly, E. F. Choo, T. L. Hunsaker, E. W. Chan, M. Merchant, S. Kharbanda, K. E. Gascoigne, S. Kaufman, M. H. Beresini, J. Liao, W. Liu, K. X. Chen, Z. Chen, A. R. Conery, A. Cote, H. Jayaram, Y. Jiang, J. R. Kiefer, T. Kleinheinz Y. Li, J. Maher, E. Pardo, F. Poy, K. L. Spillane, F. Wang, J. Wang, X. Wei Z. Xu, Z. Xu, I. Yen, L. Zawadzke, X. Zhu, S. Bellon, R. Cummings, A. G. Cochran, B. K. Albrecht, S. Magnuson
Discovery Of A Potent And Selective In Vivo Probe (Gne-272) For The Bromodomains Of Cbp/Ep300.
J. Med. Chem. V. 59 10549 2016
PubMed-ID: 27682507  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01022

(-) Compounds

Molecule 1 - CREB-BINDING PROTEIN
    Chains: A, B, C
    EC Number: 2.3.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BROMODOMAIN (UNP RESIDUES 1085-1196)
    Gene: CREBBP, CBP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
16XG3Ligand/Ion3-[[1-(CYCLOPROPYLMETHYL)-5-ETHANOYL-6,7-DIHYDRO-4~{H}-PYRAZOLO[4,3-C]PYRIDIN-3-YL]AMINO]-~{N}-PROPAN-2-YL-BENZAMIDE
2EDO8Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
16XG1Ligand/Ion3-[[1-(CYCLOPROPYLMETHYL)-5-ETHANOYL-6,7-DIHYDRO-4~{H}-PYRAZOLO[4,3-C]PYRIDIN-3-YL]AMINO]-~{N}-PROPAN-2-YL-BENZAMIDE
2EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
16XG1Ligand/Ion3-[[1-(CYCLOPROPYLMETHYL)-5-ETHANOYL-6,7-DIHYDRO-4~{H}-PYRAZOLO[4,3-C]PYRIDIN-3-YL]AMINO]-~{N}-PROPAN-2-YL-BENZAMIDE
2EDO3Ligand/Ion1,2-ETHANEDIOL
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
16XG1Ligand/Ion3-[[1-(CYCLOPROPYLMETHYL)-5-ETHANOYL-6,7-DIHYDRO-4~{H}-PYRAZOLO[4,3-C]PYRIDIN-3-YL]AMINO]-~{N}-PROPAN-2-YL-BENZAMIDE
2EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:1106 , LEU A:1109 , PRO A:1110 , LEU A:1120 , ASN A:1168 , ARG A:1173 , VAL A:1174 , HOH A:1316 , HOH A:1381 , HOH A:1428binding site for residue 6XG A 1201
02AC2SOFTWAREASN A:1162 , ASN A:1163 , HOH A:1328 , ASP B:1116binding site for residue EDO A 1202
03AC3SOFTWARETRP A:1158 , GLU A:1186 , EDO A:1204 , HOH A:1318 , TYR B:1102 , LYS B:1139binding site for residue EDO A 1203
04AC4SOFTWARETRP A:1158 , GLU A:1186 , EDO A:1203 , HOH A:1321 , HOH A:1358 , GLN B:1113binding site for residue EDO A 1204
05AC5SOFTWAREPRO B:1106 , LEU B:1109 , PRO B:1110 , GLN B:1113 , LEU B:1120 , ILE B:1122 , ASN B:1168 , ARG B:1173 , HOH B:1310 , HOH B:1324 , HOH B:1385 , HOH B:1416binding site for residue 6XG B 1201
06AC6SOFTWAREVAL B:1115 , ASP B:1116 , HOH B:1315 , HOH B:1341binding site for residue EDO B 1202
07AC7SOFTWAREARG B:1173 , LYS B:1176 , HOH B:1411binding site for residue EDO B 1203
08AC8SOFTWAREGLU B:1107 , HOH B:1338 , HOH B:1366binding site for residue EDO B 1204
09AC9SOFTWAREPRO C:1106 , LEU C:1109 , PRO C:1110 , LEU C:1120 , ASN C:1168 , ARG C:1173 , VAL C:1174 , EDO C:1203 , HOH C:1310 , HOH C:1393 , HOH C:1414binding site for residue 6XG C 1201
10AD1SOFTWAREASP A:1116 , ASN C:1162 , ASN C:1163 , HOH C:1364 , HOH C:1425binding site for residue EDO C 1202
11AD2SOFTWAREARG C:1173 , 6XG C:1201 , HOH C:1350binding site for residue EDO C 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KTW)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp A:1105 -Pro A:1106
2Asp B:1105 -Pro B:1106
3Asp C:1105 -Pro C:1106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KTW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KTW)

(-) Exons   (0, 0)

(no "Exon" information available for 5KTW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                5ktw A 1083 AAFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQAL 1196
                                  1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                5ktw B 1083 AAFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQAL 1196
                                  1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192    


Chain C from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                5ktw C 1083 AAFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQAL 1196
                                  1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KTW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KTW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KTW)

(-) Gene Ontology  (66, 66)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBP_HUMAN | Q92793: 1jsp 1liq 1rdt 1wo3 1wo4 1wo5 1wo6 1wo7 1zoq 2d82 2kje 2kwf 2l84 2l85 2lxs 2lxt 2n1a 2rny 3dwy 3p1c 3p1d 3p1e 3p1f 3svh 4a9k 4n3w 4n4f 4nr4 4nr5 4nr6 4nr7 4nyv 4nyw 4nyx 4ouf 4tqn 4ts8 4whu 4yk0 5cgp 5dbm 5eic 5eng 5ep7 5gh9 5h85 5i83 5i86 5i89 5i8b 5i8g 5j0d 5jem 5ktu 5ktx 5mpz 5mqe 5mqg 5mqk 5tb6

(-) Related Entries Specified in the PDB File

5ktx 5ku3