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(-) Description

Title :  THE CRYSTAL STRUCTURE OF FGFR4 KINASE DOMAIN IN COMPLEX WITH LY2874455
 
Authors :  D. Wu, L. Chen, Y. Chen
Date :  26 Apr 16  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Small-Molecule Inhibitor, Atp Binding Pocket, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Wu, M. Guo, M. A. Philips, L. Qu, L. Jiang, J. Li, X. Chen, Z. Chen, L. Chen, Y. Chen
Crystal Structure Of The Fgfr4/Ly2874455 Complex Reveals Insights Into The Pan-Fgfr Selectivity Of Ly2874455
Plos One V. 11 62491 2016
PubMed-ID: 27618313  |  Reference-DOI: 10.1371/JOURNAL.PONE.0162491

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET28A
    Expression System StrainBL21 ROSETTA
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentPROTEIN KINASE DOMAIN, UNP RESIDUES 445-753
    GeneFGFR4, JTK2, TKF
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFGFR-4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
16LF1Ligand/Ion2-[4-[E-2-[5-[(1R)-1-[3,5-BIS(CHLORANYL)PYRIDIN-4-YL]ETHOXY]-1H-INDAZOL-3-YL]ETHENYL]PYRAZOL-1-YL]ETHANOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:473 , GLU A:475 , ALA A:501 , GLU A:551 , CYS A:552 , ALA A:553 , ALA A:554 , GLY A:556 , ASN A:557 , ARG A:616 , LEU A:619 , HOH A:914binding site for residue 6LF A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JKG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:475 -Gly A:476
2Gly A:569 -Pro A:570

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JKG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JKG)

(-) Exons   (0, 0)

(no "Exon" information available for 5JKG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeeee......eeeeeee.........eeeeeee.....hhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh............hhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jkg A 453 DLPLDPLWEFPRDRLVLGKPLGEGAFGQVVRAEAFGMDPARPDQASTVAVKMLKDDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV 750
                                   462       472       482       492       502    || 515       525       535       545       555       565    || 587       597       607       617       627     ||654       664       674       684       694       704       714       724       734       744      
                                                                                507|                                                        570|                                               633|                                                                                                   
                                                                                 511                                                         583                                                651                                                                                                   

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JKG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JKG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JKG)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P224551qct 4qq5 4qqc 4qqj 4qqt 4qrc 4r6v 4tye 4tyg 4tyi 4tyj 4uxq 4xcu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JKG)