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(-) Description

Title :  CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN THE PRESENCE OF 30 MM ZINC AT PH 7.4
 
Authors :  K. B. Handing, I. G. Shabalin, D. R. Cooper, K. Szlachta, S. C. Almo, W. Mi York Structural Genomics Research Consortium (Nysgrc)
Date :  01 Mar 16  (Deposition) - 27 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. B. Handing, I. G. Shabalin, O. Kassaar, S. Khazaipoul, C. A. Blindauerd, A. J. Stewart, M. Chruszcz, W. Minor
Structural Studies Of Zinc Carrier Sites In Human And Horse Serum Albumins.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Fragment: RESIDUES 25-607
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2ZN13Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:3 , GLU A:6 , HIS A:9 , HOH A:773 , HOH A:831binding site for residue ZN A 601
02AC2SOFTWAREHIS A:18 , HOH A:777 , HOH A:860 , HOH A:897binding site for residue ZN A 602
03AC3SOFTWAREHIS A:67 , ASP A:248 , HOH A:703 , HOH A:731binding site for residue ZN A 603
04AC4SOFTWAREHIS A:145 , HOH A:830 , HOH A:840 , HOH A:889binding site for residue ZN A 604
05AC5SOFTWARELEU A:237 , HIS A:241 , HOH A:766 , HOH A:829 , HOH A:881binding site for residue ZN A 605
06AC6SOFTWAREHIS A:246 , HOH A:854 , HOH A:877 , HOH A:900binding site for residue ZN A 606
07AC7SOFTWAREGLU A:152 , HIS A:156 , HIS A:287 , HOH A:826binding site for residue ZN A 607
08AC8SOFTWAREASP A:311 , HIS A:317 , HOH A:740binding site for residue ZN A 608
09AC9SOFTWAREHIS A:451 , HOH A:864 , HOH A:867 , HOH A:892binding site for residue ZN A 609
10AD1SOFTWAREGLU A:517 , HOH A:728 , HOH A:814 , HOH A:857binding site for residue ZN A 610
11AD2SOFTWAREASP A:511 , HOH A:707 , HOH A:797 , HOH A:862binding site for residue ZN A 611
12AD3SOFTWARECYS A:34 , ALA A:78 , HOH A:816 , HOH A:945binding site for residue ZN A 612
13AD4SOFTWAREGLU A:128 , GLU A:441 , ARG A:444binding site for residue ZN A 613
14AD5SOFTWAREALA A:303 , LEU A:304 , ALA A:305 , ARG A:336binding site for residue SO4 A 614

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:199 -A:245
7A:244 -A:252
8A:264 -A:278
9A:277 -A:288
10A:315 -A:360
11A:359 -A:368
12A:391 -A:437
13A:436 -A:447
14A:460 -A:476
15A:475 -A:486
16A:513 -A:558
17A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IJE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IJE)

(-) Exons   (0, 0)

(no "Exon" information available for 5IJE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhh...........hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhh............hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ije A   3 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IJE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IJE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IJE)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ije
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  ALBU_HORSE | P35747
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 3v08 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5dqf 5hoz 5id9 5iih 5iiu 5iix 5ij5 5v0v

(-) Related Entries Specified in the PDB File

5hoz
5iih
5iiu
5iix
5ij5 RELATED ID: NYSGRC-491003 RELATED DB: TARGETTRACK