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(-) Description

Title :  CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN
 
Authors :  A. Dayal, K. Jablonska, P. J. Porebski, K. A. Majorek, M. Chruszcz, S. C. W. Minor, New York Structural Genomics Research Consortium (N
Date :  07 Dec 11  (Deposition) - 11 Jan 12  (Release) - 10 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Allergen, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Carrier Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. A. Majorek, P. J. Porebski, A. Dayal, M. D. Zimmerman, K. Jablonska, A. J. Stewart, M. Chruszcz, W. Minor
Structural And Immunologic Characterization Of Bovine, Horse, And Rabbit Serum Albumins.
Mol. Immunol. V. 52 174 2012
PubMed-ID: 22677715  |  Reference-DOI: 10.1016/J.MOLIMM.2012.05.011

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Organism Common: DOMESTIC HORSE,EQUINE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 31)

Asymmetric/Biological Unit (5, 31)
No.NameCountTypeFull Name
1BR11Ligand/IonBROMIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4SO46Ligand/IonSULFATE ION
5UNX12Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:145 , PRO A:146 , TYR A:147 , SER A:192 , HOH A:652BINDING SITE FOR RESIDUE BR A 584
02AC2SOFTWAREARG A:256 , LEU A:282 , SER A:286BINDING SITE FOR RESIDUE BR A 585
03AC3SOFTWAREVAL A:417 , SER A:418 , THR A:421BINDING SITE FOR RESIDUE BR A 586
04AC4SOFTWAREALA A:414 , PRO A:415 , GLN A:416 , SER A:469BINDING SITE FOR RESIDUE BR A 588
05AC5SOFTWAREALA A:510 , GLU A:564BINDING SITE FOR RESIDUE BR A 589
06AC6SOFTWAREPRO A:516 , GLU A:517BINDING SITE FOR RESIDUE SO4 A 590
07AC7SOFTWAREHIS A:9 , ARG A:10BINDING SITE FOR RESIDUE SO4 A 591
08AC8SOFTWAREHIS A:3 , HIS A:9 , ASN A:12BINDING SITE FOR RESIDUE SO4 A 592
09AC9SOFTWAREARG A:409BINDING SITE FOR RESIDUE SO4 A 593
10BC1SOFTWAREPHE A:508 , HIS A:509 , ASP A:511 , ILE A:512BINDING SITE FOR RESIDUE SO4 A 594
11BC2SOFTWARELEU A:66 , ASP A:248 , LEU A:249 , LEU A:250 , GLU A:251BINDING SITE FOR RESIDUE BR A 595
12BC3SOFTWARELYS A:412 , THR A:539 , LYS A:540 , GLU A:541 , HOH A:727BINDING SITE FOR RESIDUE SO4 A 596
13BC4SOFTWARETRP A:213 , SER A:214 , LEU A:218 , HOH A:719BINDING SITE FOR RESIDUE EDO A 598
14BC5SOFTWARELEU A:454 , ALA A:455BINDING SITE FOR RESIDUE BR A 611
15BC6SOFTWARELYS A:261 , ASP A:511 , THR A:514 , LEU A:515BINDING SITE FOR RESIDUE PG4 A 613
16BC7SOFTWAREASN A:549 , SER A:577BINDING SITE FOR RESIDUE BR A 615

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:199 -A:245
7A:244 -A:252
8A:264 -A:278
9A:277 -A:288
10A:315 -A:360
11A:359 -A:368
12A:391 -A:437
13A:436 -A:447
14A:460 -A:476
15A:475 -A:486
16A:513 -A:558
17A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3V08)

(-) PROSITE Motifs  (2, 5)

Asymmetric/Biological Unit (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALBUMIN_1PS00212 Albumin domain signature.ALBU_HORSE184-208
376-400
574-598		  3A:160-184
A:352-376
A:550-574
2ALBUMIN_2PS51438 Albumin domain profile.ALBU_HORSE210-402
19-209
403-600		  2A:186-378
-
A:379-576

(-) Exons   (0, 0)

(no "Exon" information available for 3V08)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
 aligned with ALBU_HORSE | P35747 from UniProtKB/Swiss-Prot  Length:607

    Alignment length:581
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606 
           ALBU_HORSE    27 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGREDKEACFAEEGPKLVASSQLALA 607
               SCOP domains d3v08a1 A:3-195 automated matches                                                                                                                                                                d3v08a2 A:196-387 automated matches                                                                                                                                                             d3v08a3 A:388-583 automated matches                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------ALBUMIN_1  PDB: A:160-184-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ALBUMIN_1  PDB: A:352-376-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALBUMIN_1  PDB: A:550-574--------- PROSITE (1)
                PROSITE (2) ALBUMIN_2  PDB: - UniProt: 19-209                                                                                                                                                      ALBUMIN_2  PDB: A:186-378 UniProt: 210-402                                                                                                                                                       ALBUMIN_2  PDB: A:379-576 UniProt: 403-600                                                                                                                                                            ------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3v08 A   3 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGREDKEACFAEEGPKLVASSQLALA 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3V08)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3V08)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ALBU_HORSE | P35747)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0005504    fatty acid binding    Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0015643    toxic substance binding    Interacting selectively and non-covalently with a toxic substance, a poisonous substance that causes damage to biological systems.
biological process
    GO:0009267    cellular response to starvation    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
    GO:0019836    hemolysis by symbiont of host erythrocytes    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0051659    maintenance of mitochondrion location    Any process in which a mitochondrion is maintained in a specific location within a cell and prevented from moving elsewhere.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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  3v08
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  ALBU_HORSE | P35747
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5dqf 5hoz 5id9 5iih 5iiu 5iix 5ij5 5ije 5v0v

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3V08)