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(-) Description

Title :  CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN COMPLEX WITH ETODOLAC
 
Authors :  M. P. Czub, I. G. Shabalin, K. B. Handing, B. S. Venkataramany, E. H. Stee W. F. Anderson, W. Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
Date :  28 Feb 17  (Deposition) - 15 Mar 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Equine Serum Albumin, Etodolac, Csgid, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. P. Czub, I. G. Shabalin, K. B. Handing, B. S. Venkataramany, E. H. Steen, W. Minor
Crystal Structure Of Equine Serum Albumin Complex With Etodolac
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Fragment: UNP RESIDUES 25-607
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
18QP2Ligand/Ion[(1S)-1,8-DIETHYL-1,3,4,9-TETRAHYDROPYRANO[3,4-B]INDOL-1-YL]ACETIC ACID
28QS2Ligand/Ion[(1R)-1,8-DIETHYL-1,3,4,9-TETRAHYDROPYRANO[3,4-B]INDOL-1-YL]ACETIC ACID
3SO47Ligand/IonSULFATE ION
4TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:390 , ARG A:409 , TYR A:410 , SER A:488binding site for residue TRS A 601
02AC2SOFTWARELYS A:412 , LYS A:540binding site for residue TRS A 602
03AC3SOFTWARELYS A:17 , ASP A:131binding site for residue TRS A 603
04AC4SOFTWARELYS A:194 , ARG A:217 , LYS A:221 , ASN A:450 , HIS A:451 , HOH A:714 , HOH A:777binding site for residue TRS A 604
05AC5SOFTWAREASN A:111 , GLU A:265 , HIS A:266 , ASP A:268 , SER A:269 , HOH A:727binding site for residue SO4 A 605
06AC6SOFTWAREALA A:303 , LEU A:304 , ALA A:305 , ARG A:336binding site for residue SO4 A 606
07AC7SOFTWAREGLY A:206 , GLU A:207 , ARG A:208binding site for residue SO4 A 607
08AC8SOFTWAREALA A:321 , LYS A:322 , ASP A:323binding site for residue SO4 A 608
09AC9SOFTWARELYS A:180 , ARG A:187binding site for residue SO4 A 609
10AD1SOFTWARESER A:65 , GLU A:95 , PRO A:96binding site for residue SO4 A 610
11AD2SOFTWARELEU A:14 , GLY A:15 , GLU A:16 , LYS A:17 , HOH A:730binding site for residue SO4 A 611
12AD3SOFTWARETYR A:149 , GLU A:195 , LEU A:218 , LEU A:237 , HIS A:241 , ARG A:256 , SER A:286 , ILE A:289 , ALA A:290 , GLU A:291 , HOH A:701binding site for residue 8QP A 612
13AD4SOFTWAREARG A:208 , LYS A:211 , VAL A:215 , SER A:231 , GLY A:327 , 8QS A:614binding site for residue 8QP A 613
14AD5SOFTWAREARG A:208 , ALA A:349 , LYS A:350 , SER A:479 , LEU A:480 , 8QP A:613 , HOH A:731 , HOH A:776binding site for residue 8QS A 614
15AD6SOFTWARELEU A:115 , TYR A:137 , ARG A:144 , HIS A:145 , LEU A:181 , ILE A:188binding site for residue 8QS A 615

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:199 -A:245
7A:244 -A:252
8A:264 -A:278
9A:277 -A:288
10A:315 -A:360
11A:359 -A:368
12A:391 -A:437
13A:436 -A:447
14A:460 -A:476
15A:475 -A:486
16A:513 -A:558
17A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5V0V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5V0V)

(-) Exons   (0, 0)

(no "Exon" information available for 5V0V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5v0v A   3 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5V0V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5V0V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5V0V)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 3v08 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5dqf 5hoz 5id9 5iih 5iiu 5iix 5ij5 5ije

(-) Related Entries Specified in the PDB File

5dqf COMPLEX WITH CETIRIZINE