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(-) Description

Title :  CRYSTAL STRUCTURE OF EQUINE SERUM ALBUMIN IN THE PRESENCE OF 50 MM ZINC AT PH 4.5
 
Authors :  K. B. Handing, K. A. Majorek, I. G. Shabalin, M. T. Cymborowski, H. Zheng S. C. Almo, W. Minor, New York Structural Genomics Research Cons (Nysgrc)
Date :  01 Mar 16  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. B. Handing, I. G. Shabalin, O. Kassaar, S. Khazaipoul, C. A. Blindauerd, A. J. Stewart, M. Chruszcz, W. Minor
Structural Studies Of Zinc Carrier Sites In Human And Horse Serum Albumins.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Fragment: RESIDUES 25-607
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN15Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:451 , HOH A:809 , HOH A:813 , HOH A:821binding site for residue ZN A 601
02AC2SOFTWAREHIS A:145 , HOH A:781 , HOH A:812 , HOH A:819binding site for residue ZN A 602
03AC3SOFTWAREHIS A:534 , HOH A:778 , HOH A:793 , HOH A:805binding site for residue ZN A 603
04AC4SOFTWAREHIS A:18 , HOH A:811 , HOH A:827 , HOH A:831binding site for residue ZN A 604
05AC5SOFTWAREASP A:311 , HIS A:317 , HOH A:745 , HOH A:787binding site for residue ZN A 605
06AC6SOFTWAREASP A:478 , HOH A:727 , HOH A:748 , HOH A:757binding site for residue ZN A 606
07AC7SOFTWAREHIS A:67 , ASP A:248 , HOH A:797 , HOH A:800binding site for residue ZN A 607
08AC8SOFTWAREHIS A:509 , ASP A:511 , HOH A:742 , HOH A:786binding site for residue ZN A 608
09AC9SOFTWAREGLU A:97 , GLU A:100 , ASP A:401 , HOH A:760binding site for residue ZN A 609
10AD1SOFTWAREHIS A:246 , HOH A:791 , HOH A:808 , HOH A:810binding site for residue ZN A 610
11AD2SOFTWAREGLU A:152 , HIS A:156 , HIS A:287 , HOH A:807binding site for residue ZN A 611
12AD3SOFTWAREHIS A:3 , GLU A:6 , HOH A:704 , HOH A:761binding site for residue ZN A 612
13AD4SOFTWARETYR A:149 , LEU A:237 , HIS A:241 , HOH A:726 , HOH A:738binding site for residue ZN A 613
14AD5SOFTWAREGLU A:517 , LYS A:524 , HOH A:714 , HOH A:782 , HOH A:803binding site for residue ZN A 614
15AD6SOFTWAREGLU A:57 , HOH A:769 , HOH A:818binding site for residue ZN A 615
16AD7SOFTWAREGLU A:207 , ARG A:208 , LYS A:540 , HOH A:705binding site for residue GOL A 616

(-) SS Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:244 -A:252
7A:264 -A:278
8A:277 -A:288
9A:315 -A:360
10A:359 -A:368
11A:391 -A:437
12A:436 -A:447
13A:460 -A:476
14A:475 -A:486
15A:513 -A:558
16A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IJ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IJ5)

(-) Exons   (0, 0)

(no "Exon" information available for 5IJ5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhh............hhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ij5 A   3 HKSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA 583
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IJ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IJ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IJ5)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ij5
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  ALBU_HORSE | P35747
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 3v08 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5dqf 5hoz 5id9 5iih 5iiu 5iix 5ije 5v0v

(-) Related Entries Specified in the PDB File

5hoz
5iih
5iiu
5iix RELATED ID: NYSGRC-491003 RELATED DB: TARGETTRACK